Hg_chrom2_TN10mRNA_2922
Organism: Heterodera glycines Gene Locus: chr2:4097709-4098352 Feature type: polypeptideProtein Sequence
Length: 128
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.363 | 0.908 | 0.568 | 0.0 | 0.781 | 0.401 | 1.302 | 1.562 | 1.215 | 1.372 | 1.302 | 1.379 | 0.868 | 1.502 | 1.116 | 1.116 | 1.025 | 0.592 | 0.0 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2786
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_19578
|
— |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
plastid
|
mitochondria
|
— |
20-40
|
0.952
|
— | — | — |
0.960
|
0.416
|
0.000
|
— |
0.129
|
0.046
|
0.734
|
0.027
|
0.426
|
0.194
|
0.151
|
0.043
|
0.504
|
0.603
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000101
|
1.000
|
14.000
|
Hsc_gene_17431.t1;Hsc_gene_17432.t1;Hsc_gene_19577.t1;Hsc_gene_19578.t1;Hsc_gene_21161.t1;Hsc_gene_21505.t1;Hsc_gene_26287.t1;Hsc_gene_26288.t1;Hsc_gene_26288.t2;Hsc_gene_26288.t3;Hsc_gene_5515.t1;Hsc_gene_9286.t1;Hsc_gene_9286.t2;Hsc_gene_9287.t1
|
— | — |
Q9BN21.1 CLAVATA3/ESR (CLE)-related protein 1 [Heterodera glycines]
|
Q86RQ1.1 CLAVATA3/ESR (CLE)-related protein 2 [Heterodera glycines]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
67-128
|
1.000
|
1-66
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.892
|
13388.470
|
11.006
|
10.000
|
25.000
|
6.250
|
44.531
|
55.469
|
17.188
|
7.812
|
55.469
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
355.192
|
0.464
|
1.622
|
146.196
|
101.410
|
10.002
|
26.994
|
4.671
|
4.146
|
1441.594
|
825.545
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
8.177
|
6.617
|
-0.558
|
-3.328
|
1.447
|
— |
2.676
|
-8.595
|
5.371
|
— | — | — |