Hg_chrom2_TN10mRNA_2929
Organism: Heterodera glycines Gene Locus: chr2:4130063-4132669 Feature type: polypeptideProtein Sequence
Length: 441
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.896 | 1.16 | 1.154 | 0.86 | 1.398 | 0.698 | 0.567 | 1.02 | 1.209 | 1.44 | 1.099 | 1.2 | 2.016 | 0.567 | 0.787 | 0.907 | 0.558 | 0.893 | 1.57 | 1.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2793
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.620
|
0.171
|
0.009
|
0.661
|
0.119
|
0.175
|
0.100
|
0.008
|
0.206
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006690
|
1.000
|
1.000
|
Hsc_gene_11237.t1
|
— | — |
Q6U7I1.1 Ubiquitin carboxyl-terminal hydrolase 7 [Gallus gallus]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.772|GO:0110165_0.763|GO:0005622_0.719|GO:0043226_0.638|GO:0005737_0.633|GO:0008150_0.620|GO:0043229_0.613|GO:0003674_0.572|GO:0016020_0.507
|
IPR000210+9-116_18-94_18-125+|IPR002083+291-424_296-416+|IPR008974+281-432+|IPR011333+1-152_3-116+|IPR011705+129-239_132-202+
|
SM00225+18-125+|SM00875+129-239+
|
PF00651+9-116+BTB/POZ_domain|PF07707+132-202+BTB_And_C-terminal_Kelch|PF22486+296-416+MATH_domain
|
— |
PTHR45774+2-254+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-441
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
50648.940
|
4.927
|
-11.500
|
27.891
|
14.739
|
45.351
|
54.649
|
13.152
|
14.739
|
44.898
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
red
|
67.882
|
47.132
|
83.833
|
72.072
|
79.168
|
41.481
|
103.767
|
24.042
|
1.028
|
126.903
|
72.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
0.476
|
— | — |
-0.917
|
1.330
|
-0.896
|
2.252
|
— |
6.038
|
— | — | — |
No JSON data available for plots.