Hg_chrom2_TN10mRNA_2932
Organism: Heterodera glycines Gene Locus: chr2:4145722-4149957 Feature type: polypeptideProtein Sequence
Length: 181
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.578 | 0.899 | 1.105 | 0.762 | 1.565 | 0.708 | 0.658 | 0.276 | 1.351 | 0.747 | 2.009 | 0.975 | 0.614 | 1.806 | 1.128 | 1.026 | 1.359 | 0.67 | 0.0 | 0.325 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2796
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
Gland18-1-3|KT954100.1#tn8jg14269.t2
|
Gland18-1-2|KT9540991#X12jg4319t1
|
Hsc_gene_21491
|
— | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRGELDTPEFYKKSPK,KSPKNKVIGINSPRKPNNGSPRKDKKALQKERQEERKQKEREREN
|
— | — | — | — |
1-20
|
0.993
|
1.000
|
0.000
|
0.000
|
0.524
|
0.114
|
0.011
|
0.664
|
0.111
|
0.042
|
0.065
|
0.002
|
0.146
|
0.147
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001806
|
1.000
|
3.000
|
Hsc_gene_21492.t1;Hsc_gene_26474.t1;Hsc_gene_590.t1
|
— | — | — |
ANC33044.1 GLAND18-3-2 [Heterodera glycines]
|
XP_040775127
|
0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-181
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.911
|
20093.930
|
9.454
|
6.500
|
34.807
|
3.867
|
56.906
|
43.094
|
19.337
|
15.470
|
51.934
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
27141.684
|
354.351
|
15466.936
|
6353.781
|
932.489
|
29.221
|
24.355
|
403.240
|
131024.517
|
11639.843
|
62804.703
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.218
|
4.027
|
-1.175
|
-2.801
|
-4.981
|
— |
3.709
|
-3.918
|
3.402
|
-4.205
|
— | — | — |