Hg_chrom2_TN10mRNA_2934
Organism: Heterodera glycines Gene Locus: chr2:4155721-4160653 Feature type: polypeptideProtein Sequence
Length: 731
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.939 | 1.113 | 0.647 | 1.038 | 0.889 | 1.333 | 0.603 | 1.847 | 1.307 | 1.109 | 0.995 | 1.529 | 1.748 | 1.079 | 1.145 | 0.899 | 0.875 | 0.788 | 1.263 | 0.604 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2798
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
RAKRHKKVIKRLRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.269
|
0.098
|
0.082
|
0.259
|
0.597
|
0.335
|
0.212
|
0.015
|
0.441
|
0.364
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000236
|
2.000
|
8.000
|
Hsc_gene_1405.t1;Hsc_gene_1405.t2;Hsc_gene_16432.t1;Hsc_gene_21494.t1;Hsc_gene_21494.t2;Hsc_gene_26266.t1;Hsc_gene_9074.t1;Hsc_gene_9074.t2
|
Hsc_gene_21494.t2;Hsc_gene_26469.t1;Hsc_gene_9074.t1
|
— | — |
ADM16639.1 transposase, partial [Meloidogyne javanica]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-731
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
83038.820
|
9.338
|
37.500
|
24.761
|
13.680
|
46.375
|
53.625
|
15.869
|
8.892
|
46.922
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
24.107
|
2.679
|
4.938
|
7.595
|
4.163
|
46.357
|
1.222
|
57.749
|
0.000
|
58.704
|
33.545
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.367
|
— | — |
3.479
|
-5.236
|
— |
-5.415
|
-6.671
|
— | — | — | — |
No JSON data available for plots.