Hg_chrom2_TN10mRNA_2935
Organism: Heterodera glycines Gene Locus: chr2:4169724-4171022 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.867 | 0.578 | 0.452 | 0.857 | 0.518 | 1.911 | 0.592 | 1.863 | 1.104 | 1.427 | 0.847 | 2.192 | 2.07 | 0.717 | 1.014 | 1.508 | 0.611 | 1.035 | 0.478 | 0.913 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2799
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
KSSRRRKRSSK
|
— | — |
52-118
|
0.962
|
— | — |
0.000
|
— | — |
0.431
|
0.285
|
0.023
|
0.176
|
0.443
|
0.355
|
0.229
|
0.100
|
0.230
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006692
|
1.000
|
1.000
|
Hsc_gene_21498.t1
|
Hsc_gene_21498.t1
|
— | — | — |
PJO44715
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-161
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
18210.230
|
9.938
|
11.000
|
19.876
|
14.907
|
44.099
|
55.901
|
14.286
|
5.590
|
44.720
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
28.293
|
0.687
|
21.832
|
22.916
|
3.906
|
3.519
|
1.927
|
3.059
|
106.599
|
22.139
|
58.336
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.761
|
4.920
|
— |
-2.576
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.