Hg_chrom2_TN10mRNA_2948
Organism: Heterodera glycines Gene Locus: chr2:4284630-4290548 Feature type: polypeptideProtein Sequence
Length: 614
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.345 | 0.682 | 0.977 | 0.225 | 1.602 | 1.921 | 0.717 | 1.384 | 0.977 | 1.255 | 1.283 | 0.671 | 0.679 | 0.47 | 1.595 | 0.768 | 0.721 | 0.814 | 0.752 | 0.431 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2812
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.460
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KAKKGGHGRPKA,KRFDRVYQGHSKKGRH,RKKDERKAFESSEPKRTRD,KRTRDSAAIDPVDLKAKKG,RKLDESLSKMALEFERRRT
|
5-25
|
0.975
|
— | — | — | — |
0.196
|
— | — |
0.146
|
0.906
|
0.030
|
0.197
|
0.132
|
0.130
|
0.104
|
0.030
|
0.081
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001808
|
4.000
|
0.000
|
0.000
|
Hsc_gene_16933.t1
|
— |
Q22505.2 MICOS complex subunit MIC60-1 [Caenorhabditis elegans]
|
KAI1728867.1 mitochondrial inner membrane protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.935|GO:0008150_0.935|GO:0110165_0.934|GO:0005622_0.892|GO:0043226_0.845|GO:0016020_0.837|GO:0043229_0.819|GO:0005737_0.794|GO:0009987_0.775|GO:0043227_0.764|GO:0043231_0.726|GO:0071840_0.665|GO:0016043_0.651|GO:0006996_0.612|GO:0007005_0.561|GO:0031967_0.559|GO:0005739_0.558|GO:0005740_0.546
|
IPR019133+62-575_153-575+
|
— |
PF09731+62-575+Mitochondrial_inner_membrane_protein
|
— |
PTHR15415+153-575+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-256
|
1.000
|
257-614
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.592
|
68993.950
|
9.395
|
16.500
|
34.039
|
7.655
|
54.235
|
45.765
|
19.055
|
14.984
|
44.137
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
541.797
|
544.454
|
651.054
|
548.380
|
649.487
|
664.707
|
672.695
|
581.309
|
540.629
|
347.857
|
430.473
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.127
|
— |
0.212
|
— | — |
-0.301
|
0.355
|
— | — | — | — | — |
No JSON data available for plots.