Hg_chrom2_TN10mRNA_2952
Organism: Heterodera glycines Gene Locus: chr2:4306416-4311967 Feature type: polypeptideProtein Sequence
Length: 482
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.037 | 0.627 | 0.604 | 1.002 | 0.864 | 1.862 | 0.939 | 1.763 | 1.014 | 1.065 | 0.817 | 1.342 | 1.268 | 0.798 | 1.482 | 1.541 | 0.816 | 0.66 | 0.958 | 0.244 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2816
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.874
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
LGEV
|
30-51
|
0.924
|
— | — | — | — |
0.000
|
— | — |
0.228
|
0.483
|
0.026
|
0.601
|
0.083
|
0.154
|
0.214
|
0.135
|
0.476
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000529
|
1.000
|
6.000
|
Hsc_gene_17965.t1;Hsc_gene_1905.t1;Hsc_gene_2932.t1;Hsc_gene_2932.t2;Hsc_gene_2932.t3;Hsc_gene_2932.t4
|
Hsc_gene_17965.t1;Hsc_gene_1901.t4;Hsc_gene_1905.t1;Hsc_gene_1907.t1;Hsc_gene_2932.t1;Hsc_gene_2932.t2;Hsc_gene_2932.t3
|
— | — |
KAI1702940.1 globin-like protein 9 [Ditylenchus destructor]
|
No
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019825|GO:0020037
|
— |
IPR012292+107-291+|IPR044399+116-285+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
375-482
|
1.000
|
1-374
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
53073.290
|
10.000
|
28.500
|
24.689
|
10.166
|
50.415
|
49.585
|
16.183
|
8.506
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
19.069
|
8.719
|
44.349
|
17.368
|
5.755
|
3.994
|
12.998
|
14.507
|
11.644
|
34.312
|
24.597
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.118
|
0.857
|
-1.242
|
-1.633
|
— |
1.715
|
1.761
|
— | — | — | — | — | — |
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