Hg_chrom2_TN10mRNA_2953
Organism: Heterodera glycines Gene Locus: chr2:4313943-4317890 Feature type: polypeptideProtein Sequence
Length: 420
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 1.052 | 0.693 | 1.314 | 0.992 | 0.855 | 0.51 | 0.952 | 1.323 | 1.48 | 1.082 | 1.961 | 1.918 | 1.236 | 0.972 | 1.224 | 0.625 | 0.794 | 0.183 | 0.84 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2817
|
— | — |
1.889
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRPFSKCSVCCRKCKY
|
— | — | — | — | — | — |
0.000
|
— | — |
0.776
|
0.100
|
0.012
|
0.494
|
0.038
|
0.034
|
0.045
|
0.003
|
0.043
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001809
|
3.000
|
1.000
|
Hsc_gene_17964.t1
|
Hsc_gene_17962.t1;Hsc_gene_17964.t1
|
— |
P18514.1 Retinoic acid receptor alpha [Notophthalmus viridescens]
|
CAD2179813.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.889|GO:0005575_0.743|GO:0110165_0.743|GO:0005622_0.674|GO:0050896_0.631|GO:0065007_0.606|GO:0016020_0.603|GO:0009987_0.595|GO:0050789_0.586|GO:0043226_0.584|GO:0043229_0.577|GO:0003674_0.571|GO:0050794_0.521|GO:0043227_0.518|GO:0043231_0.510|GO:0005488_0.507
|
IPR000536+177-406_208-377_213-367+|IPR001628+5-66_5-70_7-64_8-24_24-39_47-55_55-63+|IPR013088+3-70+|IPR035500+202-387_204-403+|IPR050274+7-382+
|
SM00399+5-66+|SM00430+208-377+
|
PF00104+213-367+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+7-64+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR24083+7-382+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-420
|
8hbm_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.851
|
47479.450
|
8.474
|
13.000
|
23.571
|
11.905
|
43.810
|
56.190
|
13.810
|
9.762
|
46.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
11.382
|
0.379
|
3.716
|
4.103
|
0.341
|
0.639
|
0.704
|
0.560
|
18.747
|
31.821
|
26.218
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.048
|
3.291
|
— |
-3.653
|
— | — | — | — | — | — |
-6.329
|
— | — |
No JSON data available for plots.