Hg_chrom2_TN10mRNA_2956
Organism: Heterodera glycines Gene Locus: chr2:4327045-4333521 Feature type: polypeptideProtein Sequence
Length: 521
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.536 | 1.027 | 1.047 | 3.574 | 0.672 | 1.772 | 0.96 | 1.152 | 1.194 | 0.778 | 0.727 | 1.016 | 1.013 | 1.144 | 1.371 | 0.768 | 0.975 | 0.814 | 0.738 | 0.565 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2820
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRCTLEEVPVIDRCLKK
|
30-59
|
0.984
|
14-54
|
0.989
|
— | — |
0.000
|
— | — |
0.127
|
0.089
|
0.032
|
0.173
|
0.083
|
0.077
|
0.208
|
0.014
|
0.342
|
0.702
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006694
|
1.000
|
1.000
|
Hsc_gene_17954.t1
|
Hsc_gene_17954.t1
|
— | — |
KAF7630866.1 hypothetical protein Mgra_00008879 [Meloidogyne graminicola]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006149+214-268_375-422_432-481+|IPR006150+270-321_322-367_441-474+
|
SM00289+270-321_322-367_441-474+
|
PF01683+214-268_375-422_432-481+EB_module
|
— |
PTHR37157+378-479+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;521-521
|
1.000
|
6-520
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
57869.300
|
7.793
|
15.000
|
23.608
|
8.829
|
46.257
|
53.743
|
13.820
|
9.789
|
55.854
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
525.036
|
283.767
|
142.702
|
280.397
|
526.490
|
942.416
|
458.700
|
280.034
|
331.012
|
955.835
|
688.053
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.223
|
— |
1.085
|
0.877
|
0.856
|
-1.029
|
-1.864
|
0.858
|
— | — | — | — | — |
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