Hg_chrom2_TN10mRNA_2967
Organism: Heterodera glycines Gene Locus: chr2:4414720-4418243 Feature type: polypeptideProtein Sequence
Length: 500
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.302 | 0.512 | 0.545 | 0.552 | 0.733 | 0.513 | 0.929 | 1.2 | 1.111 | 2.216 | 0.394 | 2.588 | 1.611 | 0.923 | 0.735 | 1.171 | 0.656 | 0.909 | 1.538 | 0.765 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2830
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.942
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.003
|
— | — |
0.075
|
0.181
|
0.020
|
0.111
|
0.288
|
0.411
|
0.331
|
0.019
|
0.782
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006697
|
1.000
|
1.000
|
Hsc_gene_17936.t1
|
Hsc_gene_17936.t1
|
— |
A0A0H2VG78.2 Glucose transporter GlcP [Staphylococcus epidermidis ATCC 12228]
|
KAI1720631.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0005575_0.908|GO:0110165_0.908|GO:0016020_0.860|GO:0008150_0.832|GO:0009987_0.731|GO:0005886_0.726|GO:0071944_0.726|GO:0051179_0.725|GO:0006810_0.721|GO:0051234_0.721|GO:0003674_0.694|GO:0055085_0.621|GO:0005622_0.605|GO:0005215_0.582|GO:0022857_0.582|GO:0005737_0.569|GO:0043226_0.557|GO:0043229_0.544|GO:0043227_0.543|GO:0043231_0.528|GO:0008643_0.514|GO:0034219_0.513|GO:0015749_0.508
|
IPR005828+47-463+|IPR020846+9-456+|IPR036259+6-467_54-462+|IPR045263+24-470+
|
— |
PF00083+47-463+Sugar_(and_other)_transporter
|
— |
PTHR23503+24-470+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-500
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
54418.130
|
6.494
|
0.000
|
16.000
|
12.800
|
32.400
|
67.600
|
8.600
|
7.400
|
48.800
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
688.620
|
34.785
|
55.864
|
181.804
|
184.829
|
275.113
|
132.212
|
216.780
|
10.793
|
2599.097
|
1489.824
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.455
|
2.250
|
1.812
|
— |
0.590
|
-1.046
|
— | — |
-8.004
|
— | — | — | — |
No JSON data available for plots.