SCN Proteipedia

Hg_chrom2_TN10mRNA_2982

Organism: Heterodera glycines Gene Locus: chr2:4513929-4517088 Feature type: polypeptide

Protein Sequence

Length: 501 (Signal peptide: 1-18)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.812	1.393	0.944	0.138	1.198	0.87	0.784	0.798	1.419	1.537	1.058	1.644	1.331	0.691	1.141	0.884	0.785	0.817	0.614	1.174	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2844	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	Yes	—	—	—	—	—	—	—

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	nuclear_localization_signal	cytoplasm\|nucleus	nucleus	RRTTELHQRLLKRIGR	—	—	—	—	1-18	0.966	1.000	0.000	0.000	0.562	0.245	0.133	0.674	0.185	0.119	0.152	0.028	0.116	0.267

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006701	1.000	1.000	Hsc_gene_24944.t1	Hsc_gene_24944.t1	—	P35668.1 Glutathione synthetase [Xenopus laevis]	5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]	No	-0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004363\|GO:0005524\|GO:0006750\|GO:0016874	GO:0008150_0.945\|GO:0003674_0.857\|GO:0008152_0.784\|GO:0009987_0.767\|GO:0005575_0.715\|GO:0110165_0.712\|GO:0050896_0.682\|GO:0044237_0.646\|GO:0009058_0.631\|GO:0044249_0.617\|GO:0003824_0.602\|GO:0005622_0.553\|GO:0006518_0.548\|GO:0006575_0.548\|GO:0006749_0.548\|GO:0006750_0.548\|GO:0006790_0.548\|GO:0019184_0.548\|GO:0042398_0.548\|GO:0043043_0.548\|GO:0043603_0.548\|GO:0043604_0.548\|GO:0044272_0.548\|GO:0016874_0.536\|GO:0004363_0.531\|GO:0016879_0.531\|GO:0016881_0.531\|GO:1904091_0.531	IPR004887+238-322+\|IPR005615+14-501_28-500_31-500+\|IPR014042+84-362+\|IPR014049+33-442+\|IPR014709+363-430+\|IPR016185+235-322+\|IPR037013+202-326+	—	PF03199+238-322+Eukaryotic_glutathione_synthase\|PF03917+31-500+Eukaryotic_glutathione_synthase,_ATP_binding_domain	—	PTHR11130+28-500+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-501	5oev_D	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.712	56792.150	7.912	5.000	26.547	11.178	46.906	53.094	14.172	12.375	45.110

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	—	—	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	—	—	—	—	—	—	—	—

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