SCN Proteipedia

Hg_chrom2_TN10mRNA_2986

Organism: Heterodera glycines Gene Locus: chr2:4540735-4559038 Feature type: polypeptide

Protein Sequence

Length: 1,551

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.81	1.349	1.231	1.0	1.01	0.893	0.975	1.193	1.49	1.15	0.938	0.493	1.719	0.657	0.868	0.995	0.877	0.762	0.992	0.796	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2848	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.791

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRRS,KQRERRERERQREEREREEGERRDREERRERETN	—	—	—	—	—	—	0.000	—	—	0.467	0.092	0.011	0.628	0.169	0.195	0.054	0.015	0.099	0.158

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006703	1.000	1.000	Hsc_gene_24940.t1	—	—	P69061.2 Ubiquitin-ribosomal protein eS31 fusion protein [Kluyveromyces lactis NRRL Y-1140]	AFD54151.1 ran-binding protein 4 [Heterodera glycines]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.883\|GO:0110165_0.882\|GO:0005622_0.767\|GO:0043226_0.684\|GO:0043229_0.663\|GO:0016020_0.660\|GO:0008150_0.642\|GO:0005737_0.614\|GO:0003674_0.594\|GO:0043227_0.556\|GO:0043231_0.524	IPR000626+1089-1158_1089-1159_1091-1157+\|IPR001870+28-218_214-410_880-1076_1169-1360_1355-1541+\|IPR002110+517-586_522-550_522-551_556-578_556-586_590-619_590-622_595-690_623-652_623-655_659-683_659-689_660-675_694-723_694-726_699-748_727-756_727-759_743-757_765-827_767-791_767-797_801-831+\|IPR003877+96-217_99-215_282-409_285-407_947-1075_950-1072_1236-1359_1239-1356_1421-1540_1425-1538+\|IPR013320+48-218_225-410_899-1076_1183-1359_1371-1541+\|IPR019954+1115-1140+\|IPR019956+1099-1119_1120-1140_1141-1162+\|IPR029071+1084-1158+\|IPR036770+504-723_521-827_724-851+\|IPR043136+34-226_229-418_895-1084_1166-1365_1366-1549+\|IPR044736+81-214_267-406_940-1072_1221-1356_1406-1537+	SM00213+1089-1159+\|SM00248+522-551_556-586_590-619_623-652_659-689_694-723_727-756_767-797_801-831+\|SM00449+96-217_282-409_947-1075_1236-1359_1421-1540+	PF00240+1091-1157+Ubiquitin_family\|PF00622+99-215_285-407_950-1072_1239-1356_1425-1538+SPRY_domain\|PF12796+517-586_595-690_765-827+Ankyrin_repeats_(3_copies)\|PF13637+699-748+Ankyrin_repeats_(many_copies)	—	PTHR24203+720-855+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	426-516	2.000	1-425;517-1551	6ne2_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.612	172471.660	5.638	-18.500	25.661	12.573	47.260	52.740	12.830	12.830	51.386

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2063.675	1954.788	1814.923	1660.537	1450.063	1511.408	1197.288	2084.817	2064.017	3102.883	2657.655

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.337	-0.372	—	-0.228	—	-0.329	0.359	-0.660	—	—	—	—	—

No JSON data available for plots.

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