Hg_chrom2_TN10mRNA_2987
Organism: Heterodera glycines Gene Locus: chr2:4563352-4579368 Feature type: polypeptideProtein Sequence
Length: 2,220
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.697 | 1.844 | 0.778 | 0.357 | 1.614 | 1.444 | 0.386 | 1.149 | 1.792 | 1.382 | 1.563 | 1.775 | 1.464 | 0.45 | 0.827 | 0.837 | 0.657 | 0.512 | 1.074 | 0.583 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2849
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2987
|
21-Not_Clustered
|
0.953
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRIR,KRKL,RKSK,PKGKRQR,RRIKRKI,KKRKNFKEFFGVAEEKRRP,KRKNFKEFFGVAEEKRRPT,KKELAKSWEKFGTETKWKK,IQKNKISEEKGNKNWAKNKLSKKENKKKMEK
|
— | — | — | — |
1-22
|
0.969
|
1.000
|
0.000
|
0.000
|
0.621
|
0.141
|
0.009
|
0.502
|
0.077
|
0.121
|
0.109
|
0.068
|
0.121
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001128
|
1.000
|
4.000
|
Hsc_gene_1512.t1;Hsc_gene_9165.t1;Hsc_gene_9165.t2;Hsc_gene_9165.t3
|
Hsc_gene_1512.t1
|
— |
Q6PCL9.1 Poly(A) polymerase gamma [Mus musculus]
|
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.758|GO:0110165_0.758|GO:0005622_0.726|GO:0043226_0.680|GO:0016020_0.674|GO:0043229_0.655|GO:0008150_0.613|GO:0043227_0.604|GO:0043231_0.579|GO:0003674_0.528|GO:0009987_0.510
|
IPR007012+1918-2055+|IPR043519+1686-1849_1713-1871+
|
— |
PF04928+1918-2055+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1744-2209+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1309-1462;2215-2220
|
2.000
|
1-1308;1463-2214
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
258854.390
|
8.222
|
34.500
|
30.631
|
10.946
|
54.054
|
45.946
|
16.667
|
13.964
|
38.063
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1042.719
|
35.954
|
89.906
|
717.346
|
207.405
|
97.392
|
50.849
|
50.693
|
1056.569
|
3300.891
|
2339.039
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.090
|
4.180
|
3.104
|
-1.821
|
-1.075
|
-0.934
|
-1.053
|
— | — | — |
-3.826
|
— | — |