Hg_chrom2_TN10mRNA_2988
Organism: Heterodera glycines Gene Locus: chr2:4579919-4580769 Feature type: polypeptideProtein Sequence
Length: 185
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.446 | 0.754 | 0.786 | 1.491 | 0.45 | 1.109 | 0.965 | 2.162 | 1.321 | 0.877 | 0.737 | 1.272 | 1.351 | 0.832 | 0.221 | 2.317 | 0.354 | 0.901 | 0.832 | 0.318 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2850
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_1943;Hsc_gene_11688;Hsc_gene_11689;Hsc_gene_1514;Hsc_gene_1515;Hsc_gene_17202;Hsc_gene_19142;Hsc_gene_16881;Hsc_gene_16882;Hsc_gene_16883;Hsc_gene_17216;Hsc_gene_19127;Hsc_gene_19128;Hsc_gene_17203;Hsc_gene_19143;Hsc_gene_24308
|
— |
Hg_chrom2_TN10mRNA_2988
|
24-Not_Clustered
|
0.938
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
— | — | — |
14-35
|
0.995
|
1-24
|
0.975
|
1.000
|
0.000
|
0.000
|
0.650
|
0.345
|
0.009
|
0.388
|
0.065
|
0.105
|
0.106
|
0.015
|
0.325
|
0.354
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000083
|
13.000
|
3.000
|
Hsc_gene_1514.t1;Hsc_gene_1515.t1;Hsc_gene_1943.t1
|
Hsc_gene_11687.t1;Hsc_gene_14768.t1;Hsc_gene_1514.t1;Hsc_gene_1515.t1;Hsc_gene_17202.t1;Hsc_gene_17203.t1;Hsc_gene_17215.t1;Hsc_gene_17220.t1;Hsc_gene_19127.t1;Hsc_gene_19128.t1;Hsc_gene_19141.t1;Hsc_gene_19143.t1;Hsc_gene_19761.t1;Hsc_gene_19764.t1;Hsc_gene_24308.t1;Hsc_gene_24309.t1
|
— | — |
AJR19773.1 esophageal gland-localized secretory protein 5 [Heterodera glycines]
|
No
|
0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
148-185
|
1.000
|
1-147
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.889
|
19207.700
|
6.877
|
2.000
|
17.297
|
11.351
|
43.243
|
56.757
|
10.270
|
7.027
|
61.081
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
pink
|
1089.101
|
0.992
|
4.224
|
32.840
|
209.488
|
51.057
|
120.843
|
4.262
|
0.000
|
4605.926
|
2631.958
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.867
|
4.908
|
3.064
|
2.641
|
-2.022
|
1.254
|
-3.695
|
4.968
|
-12.971
|
5.895
|
-4.364
|
— | — |