Hg_chrom2_TN10mRNA_2990
Organism: Heterodera glycines Gene Locus: chr2:4583668-4587071 Feature type: polypeptideProtein Sequence
Length: 480
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.678 | 0.969 | 1.061 | 0.862 | 0.938 | 0.641 | 0.818 | 0.625 | 0.787 | 0.816 | 1.389 | 0.735 | 1.62 | 1.522 | 1.148 | 0.923 | 1.605 | 0.663 | 0.641 | 1.348 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2852
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_1517a
|
— |
Hg_chrom2_TN10mRNA_2990
|
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
EKGPPGPPGKPGNKGK
|
— | — |
49-129
|
0.953
|
— | — |
0.000
|
— | — |
0.083
|
0.038
|
0.017
|
0.098
|
0.164
|
0.040
|
0.056
|
0.013
|
0.123
|
0.912
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003258
|
1.000
|
2.000
|
Hsc_gene_1517.t1;Hsc_gene_1517.t2
|
Hsc_gene_1517.t1;Hsc_gene_1517.t2
|
— | — | — |
PVG01662
|
0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;248-443
|
2.000
|
3-247;444-480
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.902
|
54008.150
|
9.323
|
19.000
|
27.500
|
12.500
|
50.417
|
49.583
|
16.042
|
11.458
|
53.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
60183.442
|
47.540
|
251.798
|
377.459
|
140281.879
|
300372.435
|
190822.458
|
45687.655
|
25.681
|
9092.840
|
5206.915
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.173
|
2.850
|
0.694
|
8.506
|
1.112
|
-0.644
|
-2.847
|
2.214
|
-8.557
|
— |
4.157
|
— | — |
No JSON data available for plots.