Hg_chrom2_TN10mRNA_2991
Organism: Heterodera glycines Gene Locus: chr2:4587109-4588614 Feature type: polypeptideProtein Sequence
Length: 165
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.493 | 1.128 | 1.102 | 3.344 | 0.707 | 1.243 | 0.722 | 1.212 | 0.539 | 1.147 | 0.092 | 1.07 | 2.189 | 1.399 | 1.608 | 1.039 | 0.695 | 0.643 | 0.466 | 1.426 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2853
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_2991
|
10-Not_Clustered
|
0.674
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— | — | — |
22-85
|
0.909
|
1-17
|
0.989
|
1.000
|
0.000
|
0.000
|
0.184
|
0.185
|
0.072
|
0.197
|
0.083
|
0.075
|
0.064
|
0.062
|
0.141
|
0.965
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006704
|
1.000
|
1.000
|
Hsc_gene_1518.t1
|
Hsc_gene_1518.t1
|
— | — | — |
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR036084+49-104+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-165
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
18883.420
|
6.055
|
-1.000
|
21.212
|
15.758
|
42.424
|
57.576
|
10.909
|
10.303
|
53.939
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
salmon
|
197.333
|
184.434
|
70.553
|
4.866
|
10.053
|
22.803
|
11.267
|
30.681
|
94.324
|
667.092
|
421.620
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.619
|
-5.380
|
-3.745
|
1.015
|
1.197
|
-1.007
|
— |
-1.297
|
— | — |
-4.151
|
8.289
|
— |