Hg_chrom2_TN10mRNA_2993
Organism: Heterodera glycines Gene Locus: chr2:4590980-4593308 Feature type: polypeptideProtein Sequence
Length: 342
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.394 | 1.02 | 1.648 | 0.403 | 0.877 | 1.425 | 0.975 | 1.608 | 1.105 | 1.383 | 0.222 | 2.236 | 1.056 | 0.619 | 1.074 | 0.543 | 0.767 | 1.196 | 0.675 | 0.344 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2855
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2993
|
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.427
|
0.397
|
0.027
|
0.727
|
0.107
|
0.251
|
0.096
|
0.009
|
0.123
|
0.420
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000784
|
3.000
|
3.000
|
Hsc_gene_1521.t1;Hsc_gene_17103.t1;Hsc_gene_17151.t1
|
— | — | — |
MBA3873084.1 ankyrin repeat domain-containing protein [Anaerolineae bacterium]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.795|GO:0003674_0.685|GO:0005575_0.668|GO:0009987_0.655|GO:0110165_0.652|GO:0016020_0.564|GO:0005622_0.561|GO:0008152_0.517|GO:0005488_0.501
|
IPR002110+58-87_58-90_62-89_98-127_98-130_100-161_131-160_131-163_164-193_164-196_165-195_198-228_203-293_232-261_232-264_265-294+|IPR036770+24-342_62-318+
|
SM00248+58-87_98-127_131-160_164-193_198-228_232-261_265-294+
|
PF00023+62-89_165-195+Ankyrin_repeat|PF12796+100-161_203-293+Ankyrin_repeats_(3_copies)
|
— |
PTHR24178+134-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;311-342
|
1.000
|
10-310
|
7qnl_AAA
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
37149.910
|
4.336
|
-20.500
|
24.269
|
9.064
|
42.690
|
57.310
|
9.942
|
14.327
|
54.386
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
647.945
|
47.922
|
48.917
|
42.174
|
161.034
|
2154.559
|
203.491
|
3931.945
|
18.314
|
349.756
|
207.710
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.902
|
3.756
|
-3.394
|
0.755
|
-4.125
|
-4.351
|
— | — | — | — |
No JSON data available for plots.