Hg_chrom2_TN10mRNA_2994
Organism: Heterodera glycines Gene Locus: chr2:4594530-4639224 Feature type: polypeptideProtein Sequence
Length: 1,301
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.903 | 1.341 | 0.755 | 1.113 | 0.961 | 1.537 | 0.695 | 2.613 | 0.803 | 1.205 | 0.99 | 2.125 | 1.196 | 0.976 | 0.894 | 0.9 | 0.857 | 0.769 | 0.887 | 0.61 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2856
|
— |
Hg_chrom2_TN10gene_2856
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2994
|
7-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRGKR,RVHKRGK
|
— | — | — | — |
1-24
|
0.862
|
0.757
|
0.000
|
0.000
|
0.840
|
0.107
|
0.007
|
0.275
|
0.032
|
0.044
|
0.049
|
0.021
|
0.122
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001129
|
2.000
|
3.000
|
Hsc_gene_17082.t1;Hsc_gene_17107.t1;Hsc_gene_17112.t1
|
— | — | — |
KAI1727695.1 zinc finger protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+683-707_685-707_797-818_831-859_904-929_1054-1078+
|
SM00355+683-707_797-818_831-859_904-929_1054-1078+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
460-656;1129-1181;1281-1301
|
3.000
|
1-459;657-1128;1182-1280
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
146458.140
|
8.159
|
47.000
|
26.057
|
12.759
|
49.347
|
50.653
|
16.141
|
9.915
|
48.424
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkmagenta
|
2115.397
|
689.155
|
997.959
|
917.872
|
648.828
|
482.483
|
710.426
|
782.324
|
2275.866
|
5587.070
|
4167.983
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.304
|
0.276
|
— |
-0.532
|
-0.413
|
0.569
|
0.592
|
— | — | — |
-2.599
|
— | — |