Hg_chrom2_TN10mRNA_3005
Organism: Heterodera glycines Gene Locus: chr2:4670396-4671206 Feature type: polypeptideProtein Sequence
Length: 196
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.475 | 0.949 | 1.113 | 1.759 | 0.51 | 1.047 | 0.486 | 1.786 | 1.587 | 0.965 | 1.005 | 1.501 | 2.551 | 1.079 | 0.937 | 0.948 | 0.836 | 0.773 | 1.962 | 1.05 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2867
|
— | — |
3.556
|
4.000
|
3.000
|
3.000
|
2.000
|
3.000
|
5.000
|
5.000
|
3.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.752
|
0.221
|
0.029
|
0.459
|
0.395
|
0.186
|
0.198
|
0.089
|
0.119
|
0.195
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000755
|
2.000
|
4.000
|
Hsc_gene_12224.t1;Hsc_gene_12224.t2;Hsc_gene_12224.t3;Hsc_gene_12224.t4
|
Hsc_gene_12224.t2;Hsc_gene_12224.t4
|
— | — |
KYN03968.1 hypothetical protein ALC62_05174, partial [Cyphomyrmex costatus]
|
No
|
-0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR007350+130-194+|IPR035896+155-195+
|
— |
PF04236+130-194+Tc5_transposase_C-terminal_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-196
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.760
|
22949.600
|
8.174
|
7.500
|
23.980
|
18.878
|
43.878
|
56.122
|
14.796
|
9.184
|
45.918
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
17.704
|
5.048
|
6.851
|
1.435
|
0.799
|
2.361
|
0.205
|
0.827
|
0.000
|
70.885
|
40.505
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.952
|
-2.145
|
— | — | — | — | — |
-6.919
|
— |
-6.122
|
— | — |
No JSON data available for plots.