Hg_chrom2_TN10mRNA_3007
Organism: Heterodera glycines Gene Locus: chr2:4698940-4702084 Feature type: polypeptideProtein Sequence
Length: 287
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.567 | 1.134 | 1.394 | 0.841 | 1.161 | 0.804 | 0.788 | 2.091 | 1.316 | 1.13 | 1.109 | 1.845 | 2.129 | 0.871 | 0.427 | 0.747 | 0.343 | 0.686 | 1.34 | 1.947 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2869
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
KKFAEEGLPDAKKCRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.069
|
0.162
|
0.003
|
0.134
|
0.451
|
0.273
|
0.477
|
0.072
|
0.682
|
0.245
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003259
|
2.000
|
1.000
|
Hsc_gene_17092.t1
|
— | — |
Q18515.2 Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [Caenorhabditis elegans]
|
KHN81580.1 Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016757
|
GO:0008150_0.911|GO:0009987_0.810|GO:0008152_0.746|GO:0044237_0.709|GO:0009058_0.695|GO:0044238_0.692|GO:0003674_0.691|GO:0043170_0.683|GO:0044249_0.674|GO:0009059_0.657|GO:0019538_0.648|GO:1901135_0.628|GO:1901137_0.601|GO:0009100_0.594|GO:0009101_0.591|GO:0003824_0.581|GO:0005575_0.520|GO:0043412_0.512|GO:0110165_0.512|GO:0036211_0.510|GO:0032501_0.503
|
IPR003378+24-132+|IPR026050+13-212+
|
— |
PF02434+24-132+Fringe-like
|
— |
PTHR23033+13-212+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-287
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
33512.050
|
5.061
|
-9.000
|
28.223
|
20.209
|
43.554
|
56.446
|
13.589
|
14.634
|
42.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkorange
|
158.494
|
227.241
|
146.152
|
48.296
|
91.999
|
539.509
|
184.965
|
177.462
|
139.008
|
58.295
|
92.886
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.868
|
-2.371
|
-1.487
|
0.897
|
2.566
|
-1.538
|
-1.708
|
— | — | — | — | — | — |
No JSON data available for plots.