Hg_chrom2_TN10mRNA_3009
Organism: Heterodera glycines Gene Locus: chr2:4720483-4733978 Feature type: polypeptideProtein Sequence
Length: 2,023
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 1.839 | 0.854 | 0.392 | 1.499 | 1.191 | 0.441 | 0.865 | 1.769 | 1.349 | 1.513 | 2.035 | 1.593 | 0.418 | 0.767 | 0.749 | 0.762 | 0.569 | 0.76 | 0.858 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2871
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRLKMIKMRWKKLKQ,KKEEKAAKYRRKKEKNKLKK
|
— | — | — | — |
1-20
|
0.845
|
1.000
|
0.000
|
0.000
|
0.625
|
0.172
|
0.008
|
0.510
|
0.131
|
0.140
|
0.156
|
0.023
|
0.104
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003260
|
2.000
|
1.000
|
Hsc_gene_17089.t1
|
Hsc_gene_17089.t1
|
— | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016779|GO:1990817
|
GO:0005575_0.732|GO:0110165_0.732|GO:0005622_0.694|GO:0043226_0.639|GO:0016020_0.638|GO:0008150_0.609|GO:0043229_0.606|GO:0043227_0.551|GO:0043231_0.530|GO:0003674_0.528
|
IPR002934+1539-1579+|IPR007012+1729-1864+|IPR043519+1523-1687_1527-1647+
|
— |
PF01909+1539-1579+Nucleotidyltransferase_domain|PF04928+1729-1864+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1548-1979+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
629-684;1295-1404
|
3.000
|
1-628;685-1294;1405-2023
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
234643.130
|
7.617
|
18.500
|
29.165
|
11.369
|
51.607
|
48.393
|
15.472
|
13.693
|
39.842
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
634.675
|
4.407
|
16.702
|
265.945
|
97.082
|
15.762
|
26.130
|
10.215
|
259.826
|
2418.241
|
1493.206
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.687
|
5.770
|
4.106
|
-1.485
|
-2.608
|
— | — |
1.496
|
-3.321
|
— |
-4.275
|
— | — |