Hg_chrom2_TN10mRNA_3013
Organism: Heterodera glycines Gene Locus: chr2:4763477-4767306 Feature type: polypeptideProtein Sequence
Length: 461
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.58 | 1.312 | 0.907 | 0.598 | 0.868 | 0.946 | 0.852 | 2.603 | 1.109 | 1.143 | 1.085 | 1.914 | 1.506 | 0.626 | 1.417 | 1.085 | 0.996 | 0.789 | 1.835 | 0.191 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2875
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular|cell_membrane
|
— |
KKRP,KRPR,KRGRYKFEVETGGKRRKAW
|
34-56
|
0.997
|
8-65
|
0.871
|
— | — |
0.101
|
— | — |
0.099
|
0.136
|
0.023
|
0.185
|
0.244
|
0.097
|
0.382
|
0.028
|
0.584
|
0.621
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003262
|
1.000
|
2.000
|
Hsc_gene_17094.t1;Hsc_gene_17094.t2
|
— | — | — |
KAI3420035.1 hypothetical protein GPALN_003369 [Globodera pallida]
|
MBU3664892
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
300-409
|
2.000
|
1-299;410-461
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
52686.190
|
10.247
|
30.000
|
29.501
|
13.666
|
52.495
|
47.505
|
19.306
|
10.195
|
46.638
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
210.900
|
110.647
|
227.345
|
102.891
|
22.224
|
5.953
|
15.410
|
45.178
|
78.379
|
665.287
|
413.755
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
— |
-1.034
|
-2.246
|
-1.885
|
1.383
|
2.817
|
-1.409
|
— | — |
-4.493
|
— | — |
No JSON data available for plots.