Hg_chrom2_TN10mRNA_3016
Organism: Heterodera glycines Gene Locus: chr2:4777829-4780047 Feature type: polypeptideProtein Sequence
Length: 279
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.417 | 1.0 | 0.261 | 1.36 | 0.538 | 0.368 | 0.427 | 1.254 | 3.027 | 2.034 | 0.652 | 2.108 | 2.589 | 0.414 | 1.097 | 0.973 | 0.588 | 0.815 | 1.103 | 1.581 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2878
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.832
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
21-41
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.140
|
0.102
|
0.012
|
0.110
|
0.270
|
0.121
|
0.170
|
0.004
|
0.771
|
0.207
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006710
|
1.000
|
1.000
|
Hsc_gene_17098.t1
|
Hsc_gene_17098.t1
|
— |
Q09638.3 Neuropeptide receptor 15 [Caenorhabditis elegans]
|
KAI1714456.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.900|GO:0009987_0.859|GO:0005575_0.785|GO:0110165_0.780|GO:0003674_0.769|GO:0065007_0.726|GO:0050896_0.720|GO:0016020_0.708|GO:0050789_0.701|GO:0051716_0.694|GO:0023052_0.682|GO:0050794_0.682|GO:0007154_0.669|GO:0007165_0.657|GO:0007186_0.654|GO:0060089_0.648|GO:0038023_0.645|GO:0004888_0.619|GO:0004930_0.579|GO:0005886_0.559|GO:0071944_0.559|GO:0005488_0.529
|
IPR000276+1-25_17-257_35-56_81-103_117-138_239-265+|IPR017452+16-257+
|
— |
PF00001+17-257+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24243+3-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-279
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
32897.890
|
9.434
|
17.500
|
16.846
|
18.638
|
32.975
|
67.025
|
12.186
|
4.659
|
34.767
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
26.185
|
1.060
|
51.925
|
38.580
|
38.332
|
20.526
|
32.794
|
33.180
|
38.699
|
4.386
|
19.092
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.369
|
5.036
|
— | — |
-0.889
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.