Hg_chrom2_TN10mRNA_3019
Organism: Heterodera glycines Gene Locus: chr2:4824931-4827139 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.906 | 0.785 | 0.519 | 1.343 | 0.736 | 1.798 | 2.474 | 0.649 | 0.462 | 0.386 | 0.551 | 0.611 | 0.505 | 3.646 | 0.795 | 0.557 | 0.511 | 0.748 | 0.4 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2881
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
GKPGRPGKPGAP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.058
|
0.049
|
0.007
|
0.118
|
0.373
|
0.255
|
0.287
|
0.004
|
0.669
|
0.264
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003263
|
2.000
|
1.000
|
Hsc_gene_17105.t1
|
Hsc_gene_17105.t1
|
F23H12.4b
|
P34687.2 Cuticle collagen 34 [Caenorhabditis elegans]
|
KAF7632318.1 Collagen alpha-5(IV) chain [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.951|GO:0032501_0.886|GO:0032502_0.866|GO:0048856_0.866|GO:0007275_0.841|GO:0005575_0.743|GO:0110165_0.739|GO:0040002_0.670|GO:0042335_0.670|GO:0071944_0.620|GO:0030312_0.570|GO:0042303_0.536|GO:0031012_0.527|GO:0062023_0.527|GO:0018996_0.525|GO:0042338_0.525
|
IPR002486+82-134_85-134+|IPR008160+236-293_301-358+|IPR050632+88-368+
|
SM01088+82-134+
|
PF01391+236-293_301-358+Collagen_triple_helix_repeat_(20_copies)|PF01484+85-134+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+88-368+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;128-385
|
1.000
|
2-127
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
38200.550
|
7.401
|
3.500
|
16.104
|
5.455
|
33.506
|
66.494
|
8.831
|
7.273
|
69.610
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
1507.122
|
243.365
|
1.366
|
3.964
|
2183.265
|
13101.460
|
21.281
|
705.044
|
27.642
|
475.523
|
283.574
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-7.701
|
-6.078
|
— |
9.072
|
2.601
|
-9.258
|
-4.334
|
-4.906
|
-4.244
|
— | — | — | — |
No JSON data available for plots.