Hg_chrom2_TN10mRNA_3020
Organism: Heterodera glycines Gene Locus: chr2:4832543-4833740 Feature type: polypeptideProtein Sequence
Length: 240
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.599 | 0.678 | 1.288 | 0.431 | 1.736 | 1.068 | 0.397 | 0.833 | 1.019 | 1.351 | 1.073 | 2.696 | 0.81 | 0.561 | 1.276 | 0.476 | 0.751 | 0.694 | 0.641 | 1.103 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2882
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.539
|
0.349
|
0.037
|
0.671
|
0.106
|
0.131
|
0.090
|
0.004
|
0.227
|
0.202
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001130
|
4.000
|
1.000
|
Hsc_gene_17184.t1
|
Hsc_gene_17080.t1;Hsc_gene_17166.t1;Hsc_gene_17184.t1;Hsc_gene_23525.t1;Hsc_gene_23541.t1
|
— |
Q20655.1 14-3-3-like protein 2 [Caenorhabditis elegans]
|
KAK6041195.1 14-3-3 protein [Cooperia oncophora]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.897|GO:0005575_0.830|GO:0110165_0.823|GO:0009987_0.799|GO:0003674_0.753|GO:0005622_0.729|GO:0005488_0.695|GO:0005737_0.649|GO:0005515_0.613|GO:0065007_0.610|GO:0043226_0.584|GO:0050789_0.571|GO:0016020_0.566|GO:0051179_0.560|GO:0050794_0.524
|
IPR000308+1-240_6-233_38-67_87-111_118-140_153-179_180-206+|IPR023410+6-240_13-232+|IPR036815+1-239_5-233+
|
SM00101+6-240+
|
PF00244+13-232+14-3-3_protein
|
— |
PTHR18860+6-233+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-240
|
4n84_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
27318.210
|
4.803
|
-8.000
|
32.500
|
9.167
|
47.500
|
52.500
|
15.000
|
17.500
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
79.084
|
0.901
|
2.482
|
11.618
|
37.925
|
353.986
|
15.025
|
272.098
|
0.000
|
85.729
|
48.988
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.537
|
2.338
|
1.679
|
3.236
|
-4.548
|
— |
-4.029
|
-7.227
|
4.395
|
— | — | — |
No JSON data available for plots.