Hg_chrom2_TN10mRNA_3021
Organism: Heterodera glycines Gene Locus: chr2:4837041-4842778 Feature type: polypeptideProtein Sequence
Length: 590
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.591 | 1.34 | 1.171 | 0.643 | 1.554 | 2.086 | 0.868 | 1.525 | 0.979 | 1.168 | 1.181 | 1.496 | 0.565 | 0.489 | 1.211 | 0.823 | 0.722 | 0.847 | 0.913 | 0.648 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2883
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.719
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.600
|
0.082
|
0.022
|
0.524
|
0.323
|
0.243
|
0.110
|
0.017
|
0.116
|
0.202
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003264
|
2.000
|
1.000
|
Hsc_gene_17187.t1
|
— | — | — |
KAI3407415.1 Ran-binding protein 10 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.750|GO:0005575_0.698|GO:0110165_0.698|GO:0005622_0.662|GO:0005737_0.541|GO:0009987_0.509
|
IPR001870+374-583+|IPR003877+440-582_443-580+|IPR013320+391-584+|IPR043136+377-590+|IPR044736+438-579+|IPR050618+297-580+
|
SM00449+440-582+
|
PF00622+443-580+SPRY_domain
|
— |
PTHR12864+297-580+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-286
|
1.000
|
287-590
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
67263.350
|
6.246
|
-3.000
|
32.542
|
8.475
|
56.610
|
43.390
|
16.780
|
15.763
|
44.746
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
169.260
|
66.564
|
256.853
|
174.792
|
323.623
|
152.172
|
642.792
|
48.105
|
18.981
|
101.939
|
66.386
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.716
|
1.256
|
-0.445
|
0.858
|
-1.075
|
2.090
|
-1.769
|
3.885
|
— | — | — | — | — |
No JSON data available for plots.