SCN Proteipedia

Hg_chrom2_TN10mRNA_3024

Organism: Heterodera glycines Gene Locus: chr2:4859956-4868260 Feature type: polypeptide

Protein Sequence

Length: 1,195 (Signal peptide: 1-20)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.837	1.576	0.822	0.721	0.921	1.03	0.717	0.962	1.395	1.334	0.697	1.674	1.278	0.676	1.264	1.076	0.823	0.9	1.159	1.181	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2886	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-Not_Clustered	0.853

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	signal_peptide\|transmembrane_domain	cell_membrane	chloroplast	KRAR,RKNNLLWKIPFGLLKRQKQ,RRAADEHAAAAAAVFNRRR	—	—	16-49	0.927	1-20	0.998	1.000	2.000	2.000	0.088	0.062	0.022	0.272	0.242	0.570	0.290	0.053	0.833	0.089

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000531	5.000	2.000	Hsc_gene_15512.t1;Hsc_gene_15550.t1	Hsc_gene_17192.t1;Hsc_gene_17193.t1	—	Q9XTY1.2 Receptor-type guanylate cyclase gcy-22 [Caenorhabditis elegans]	AAG23825.1 guanylyl cyclase [Heterodera glycines]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004383\|GO:0004672\|GO:0005524\|GO:0006182\|GO:0006468\|GO:0009190\|GO:0016849\|GO:0035556	GO:0008150_0.964\|GO:0005575_0.798\|GO:0110165_0.779\|GO:0009987_0.707\|GO:0050896_0.679\|GO:0003674_0.626\|GO:0016020_0.612\|GO:0032501_0.586\|GO:0071944_0.569\|GO:0005886_0.530\|GO:0065007_0.510	IPR000719+576-910_626-891+\|IPR001054+932-1127_960-1145_967-1144_968-1098+\|IPR001828+72-428+\|IPR011009+610-915+\|IPR011645+916-953+\|IPR018297+1075-1098+\|IPR028082+45-493+\|IPR029787+954-1145_955-1148+\|IPR050401+143-1149+	SM00044+932-1127+	PF00069+626-891+Protein_kinase_domain\|PF00211+960-1145+Adenylate_and_Guanylate_cyclase_catalytic_domain\|PF01094+72-428+Receptor_family_ligand_binding_region\|PF07701+916-953+Heme_NO_binding_associated	G3DSA:3.30.70.1230:FF:000023+929-1150+Guanylate_cyclase	PTHR11920+143-1149+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	794-852;1158-1195	2.000	1-793;853-1157	8hbh_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.787	135307.750	8.171	20.500	22.762	12.050	46.109	53.891	12.720	10.042	48.619

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	blue	327.014	31.701	127.939	124.411	65.911	36.959	146.687	89.390	6.911	1191.880	684.036

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.785	1.836	—	-0.949	-0.820	2.000	1.170	0.857	-7.568	—	—	—	—

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