Hg_chrom2_TN10mRNA_3027
Organism: Heterodera glycines Gene Locus: chr2:4884009-4890848 Feature type: polypeptideProtein Sequence
Length: 672
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.073 | 0.727 | 0.974 | 0.821 | 0.818 | 0.954 | 0.478 | 0.595 | 1.356 | 1.729 | 0.676 | 1.05 | 2.108 | 1.173 | 1.67 | 1.042 | 0.659 | 0.744 | 0.343 | 0.7 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2889
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RDPKRRR
|
90-110
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.417
|
0.280
|
0.019
|
0.585
|
0.242
|
0.310
|
0.188
|
0.149
|
0.140
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_17099.t1
|
— |
Q8VD65.3 Phosphoinositide 3-kinase regulatory subunit 4 [Mus musculus]
|
KAI3421161.1 phosphoinositide-3-kinase, regulatory subunit 4 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004674|GO:0005524|GO:0006468|GO:0016236|GO:0045324
|
GO:0008150_0.943|GO:0005575_0.825|GO:0110165_0.823|GO:0009987_0.810|GO:0016020_0.720|GO:0005622_0.712|GO:0043226_0.620|GO:0005737_0.613|GO:0043229_0.604|GO:0043227_0.579|GO:0050896_0.556|GO:0065007_0.552|GO:0050789_0.531|GO:0050794_0.507|GO:0051716_0.504
|
IPR000719+26-303_26-313_74-298+|IPR008271+143-155+|IPR011009+28-299+|IPR016024+283-573+|IPR045162+1-603+
|
SM00220+26-303+
|
PF00069+74-298+Protein_kinase_domain|PF22956+351-490+VPS15-like,_helical_domain
|
— |
PTHR17583+1-603+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-672
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.782
|
76022.480
|
9.119
|
20.000
|
24.107
|
11.607
|
42.262
|
57.738
|
13.839
|
10.268
|
46.429
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
451.998
|
224.259
|
162.130
|
104.659
|
100.418
|
136.188
|
336.836
|
98.476
|
120.452
|
1451.038
|
880.787
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.698
|
-1.237
|
-0.523
|
— |
0.454
|
1.315
|
-0.573
|
1.915
|
-3.672
|
— | — | — | — |
No JSON data available for plots.