Hg_chrom2_TN10mRNA_3028
Organism: Heterodera glycines Gene Locus: chr2:4899937-4901401 Feature type: polypeptideProtein Sequence
Length: 319
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.984 | 0.729 | 0.513 | 1.189 | 0.627 | 1.688 | 2.463 | 0.627 | 0.418 | 0.339 | 0.475 | 0.553 | 0.348 | 4.099 | 0.704 | 0.672 | 0.36 | 0.902 | 0.241 | 0.645 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2890
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
GKPGRPGKPGAP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.044
|
0.046
|
0.007
|
0.114
|
0.359
|
0.269
|
0.297
|
0.003
|
0.672
|
0.309
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003263
|
2.000
|
1.000
|
Hsc_gene_17105.t1
|
Hsc_gene_17105.t1
|
F23H12.4b
|
P34687.2 Cuticle collagen 34 [Caenorhabditis elegans]
|
KAF7632318.1 Collagen alpha-5(IV) chain [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.938|GO:0032501_0.872|GO:0032502_0.857|GO:0048856_0.857|GO:0007275_0.834|GO:0005575_0.742|GO:0110165_0.737|GO:0040002_0.670|GO:0042335_0.670|GO:0030312_0.632|GO:0071944_0.632|GO:0031012_0.563|GO:0062023_0.563|GO:0042303_0.538|GO:0018996_0.525|GO:0042338_0.525
|
IPR002486+16-68_19-68+|IPR008160+170-227_235-292+|IPR050632+22-302+
|
SM01088+16-68+
|
PF01391+170-227_235-292+Collagen_triple_helix_repeat_(20_copies)|PF01484+19-68+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+22-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
106-319
|
1.000
|
1-105
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
31198.750
|
7.136
|
2.000
|
14.420
|
5.016
|
31.034
|
68.966
|
7.837
|
6.583
|
72.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
1064.945
|
224.920
|
1.093
|
3.910
|
1524.814
|
9650.964
|
26.890
|
712.421
|
27.642
|
84.022
|
59.859
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-7.913
|
-5.985
|
1.950
|
8.575
|
2.678
|
-8.476
|
-3.877
|
-4.577
|
— | — |
4.388
|
— | — |
No JSON data available for plots.