Hg_chrom2_TN10mRNA_3031
Organism: Heterodera glycines Gene Locus: chr2:4910834-4917447 Feature type: polypeptideProtein Sequence
Length: 762
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.702 | 1.343 | 1.169 | 0.543 | 1.619 | 1.649 | 1.094 | 1.903 | 0.817 | 1.366 | 0.915 | 1.698 | 0.583 | 0.58 | 0.911 | 0.675 | 0.947 | 0.855 | 0.707 | 0.502 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2892
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.552
|
0.108
|
0.034
|
0.488
|
0.328
|
0.243
|
0.128
|
0.020
|
0.133
|
0.226
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003264
|
2.000
|
1.000
|
Hsc_gene_17187.t1
|
Hsc_gene_17187.t1
|
— | — |
KAI3407415.1 Ran-binding protein 10 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.752|GO:0005575_0.691|GO:0110165_0.691|GO:0005622_0.646|GO:0005737_0.527|GO:0009987_0.508
|
IPR001870+546-755+|IPR003877+612-754_615-752+|IPR013320+563-756+|IPR043136+550-762+|IPR044736+610-751+|IPR050618+473-752+
|
SM00449+612-754+
|
PF00622+615-752+SPRY_domain
|
— |
PTHR12864+473-752+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-460
|
2.000
|
1-36;461-762
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
84822.680
|
4.897
|
-28.500
|
30.446
|
8.530
|
53.150
|
46.850
|
14.304
|
16.142
|
48.163
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
607.492
|
78.769
|
212.567
|
155.797
|
236.964
|
119.599
|
415.178
|
33.132
|
52.631
|
2148.800
|
1250.442
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.200
|
0.847
|
-0.338
|
0.574
|
-0.973
|
1.809
|
-1.958
|
3.793
|
-5.458
|
— | — | — | — |
No JSON data available for plots.