Hg_chrom2_TN10mRNA_3034
Organism: Heterodera glycines Gene Locus: chr2:4951515-4954508 Feature type: polypeptideProtein Sequence
Length: 466
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.449 | 1.397 | 1.249 | 0.444 | 1.431 | 0.66 | 0.639 | 1.18 | 1.764 | 1.334 | 1.626 | 1.893 | 1.431 | 0.33 | 0.92 | 0.582 | 0.915 | 0.878 | 0.66 | 1.073 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2895
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKNIFENSYLVMNKIQKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.411
|
0.191
|
0.019
|
0.512
|
0.237
|
0.276
|
0.295
|
0.013
|
0.220
|
0.407
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006714
|
1.000
|
1.000
|
Hsc_gene_17182.t1
|
Hsc_gene_17182.t1;Hsc_gene_23540.t1
|
— |
Q39238.1 Serine/threonine-protein kinase TOUSLED [Arabidopsis thaliana]
|
KAI3413237.1 3-phosphoinositide dependent protein kinase-1 [Globodera pallida]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.860|GO:0005575_0.825|GO:0110165_0.822|GO:0009987_0.754|GO:0003674_0.713|GO:0005622_0.663|GO:0016020_0.600|GO:0003824_0.584|GO:0005737_0.536|GO:0043226_0.531|GO:0016740_0.524|GO:0065007_0.521|GO:0050789_0.505|GO:0140096_0.504
|
IPR000719+35-382_44-379+|IPR011009+43-381+
|
SM00220+35-382+
|
PF00069+44-379+Protein_kinase_domain
|
— |
PTHR44167+43-378+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-466
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
54267.620
|
7.247
|
4.500
|
33.047
|
12.017
|
51.288
|
48.712
|
17.597
|
15.451
|
40.558
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
386.302
|
0.605
|
84.344
|
88.956
|
22.472
|
4.123
|
1.828
|
3.053
|
1417.308
|
550.072
|
921.745
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.878
|
7.047
|
— |
-2.024
|
-2.427
|
— | — | — | — |
-3.822
|
-4.366
|
— | — |
No JSON data available for plots.