Hg_chrom2_TN10mRNA_3038
Organism: Heterodera glycines Gene Locus: chr2:4966342-4972372 Feature type: polypeptideProtein Sequence
Length: 939
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 1.857 | 0.639 | 0.441 | 1.562 | 1.065 | 0.292 | 0.958 | 1.633 | 1.382 | 1.662 | 1.441 | 2.219 | 0.532 | 0.609 | 0.837 | 0.681 | 0.613 | 1.065 | 1.002 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2899
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
12-Not_Clustered
|
0.622
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRQK,PAVKRKT,KKWLEIKKLWNKWKKA,LEIKKLWNKWKKAFNGKFKNSNKMPNFKKLMDELNKKLKDLREKKQKETEKKEEIKG
|
— | — | — | — |
1-21
|
0.796
|
1.000
|
0.000
|
0.000
|
0.667
|
0.175
|
0.010
|
0.523
|
0.104
|
0.207
|
0.107
|
0.038
|
0.098
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001818
|
2.000
|
2.000
|
Hsc_gene_17179.t1;Hsc_gene_17179.t2
|
Hsc_gene_17179.t1;Hsc_gene_17179.t2
|
— | — |
KAI3416513.1 hypothetical protein GPALN_006053 [Globodera pallida]
|
WP_194184019
|
0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
912-939
|
1.000
|
1-911
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
110558.670
|
8.681
|
19.000
|
28.754
|
14.696
|
50.905
|
49.095
|
15.868
|
12.886
|
37.806
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
172.729
|
5.541
|
41.556
|
48.121
|
6.759
|
10.911
|
27.342
|
2.504
|
634.459
|
226.320
|
401.237
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.684
|
2.986
|
— |
-2.853
|
— |
1.329
|
-2.239
|
3.593
|
— |
-3.541
|
— | — | — |