Hg_chrom2_TN10mRNA_3039
Organism: Heterodera glycines Gene Locus: chr2:4974838-4976845 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 1.506 | 1.177 | 0.372 | 0.719 | 0.922 | 0.514 | 1.439 | 0.879 | 1.507 | 1.036 | 2.116 | 1.998 | 0.553 | 1.395 | 0.514 | 0.885 | 0.927 | 2.214 | 1.164 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2900
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
47-67
|
0.985
|
— | — | — | — |
0.005
|
— | — |
0.090
|
0.099
|
0.002
|
0.148
|
0.340
|
0.188
|
0.855
|
0.003
|
0.132
|
0.526
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001819
|
2.000
|
2.000
|
Hsc_gene_17177.t1;Hsc_gene_19149.t1
|
Hsc_gene_17177.t1
|
— |
Q9Y2A9.2 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 [Homo sapiens]
|
KAI3419416.1 Beta-1,3-galactosyltransferase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.941|GO:0008152_0.759|GO:0009987_0.738|GO:0044238_0.734|GO:0009058_0.726|GO:0003674_0.716|GO:0044237_0.632|GO:0003824_0.609|GO:0044249_0.603|GO:0005575_0.556|GO:0110165_0.556|GO:0016740_0.550|GO:0016757_0.522|GO:0016758_0.522|GO:1901135_0.516|GO:0008194_0.511
|
IPR002659+70-264_100-261+
|
— |
PF01762+100-261+Galactosyltransferase
|
— |
PTHR11214+70-264+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-278
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
32889.970
|
9.656
|
12.000
|
27.338
|
16.906
|
46.403
|
53.597
|
16.547
|
10.791
|
42.806
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
97.504
|
2.370
|
11.630
|
26.006
|
27.404
|
585.506
|
314.084
|
30.201
|
0.000
|
52.629
|
30.074
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.056
|
3.317
|
1.271
|
— |
4.431
|
-0.887
|
-4.388
|
3.524
|
-6.525
|
5.558
|
— | — | — |
No JSON data available for plots.