Hg_chrom2_TN10mRNA_3041
Organism: Heterodera glycines Gene Locus: chr2:4982099-4984781 Feature type: polypeptideProtein Sequence
Length: 465
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.975 | 1.15 | 0.899 | 0.371 | 1.147 | 0.993 | 0.845 | 1.505 | 1.29 | 1.192 | 0.684 | 0.506 | 1.852 | 1.199 | 1.009 | 1.229 | 0.529 | 0.782 | 1.158 | 1.012 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2902
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3041
|
22-Not_Clustered
|
0.736
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-24
|
0.986
|
1.000
|
0.000
|
0.000
|
0.146
|
0.316
|
0.043
|
0.306
|
0.226
|
0.188
|
0.228
|
0.015
|
0.129
|
0.649
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003268
|
2.000
|
1.000
|
Hsc_gene_17174.t1
|
Hsc_gene_17174.t1
|
— |
P19223.1 Carboxypeptidase B [Rattus norvegicus]
|
KAI1699618.1 zinc carboxypeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0003674_0.707|GO:0005575_0.636|GO:0110165_0.629|GO:0008150_0.609|GO:0003824_0.577|GO:0016787_0.516
|
IPR000834+137-434_143-437_163-175_187-201_187-209_277-285_331-344+|IPR003146+35-107+|IPR036990+26-124+
|
SM00631+137-434+
|
PF00246+143-437+Zinc_carboxypeptidase|PF02244+35-107+Carboxypeptidase_activation_peptide
|
G3DSA:3.40.630.10:FF:000084+129-450+Carboxypeptidase_B2
|
PTHR11705+11-447+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
456-465
|
1.000
|
1-455
|
1cpb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
51993.580
|
6.023
|
-4.000
|
24.301
|
14.624
|
44.946
|
55.054
|
12.473
|
11.828
|
49.677
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
white
|
554.499
|
33.446
|
10.602
|
8.344
|
587.061
|
4526.610
|
47.652
|
1160.314
|
0.255
|
35.483
|
20.385
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.883
|
-2.140
|
— |
6.100
|
2.963
|
-6.559
|
-2.083
|
-4.455
|
— | — | — | — | — |