Hg_chrom2_TN10mRNA_3043
Organism: Heterodera glycines Gene Locus: chr2:4992137-4993914 Feature type: polypeptideProtein Sequence
Length: 316
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.214 | 1.03 | 0.46 | 0.873 | 0.422 | 0.974 | 0.829 | 0.949 | 0.985 | 1.155 | 0.911 | 0.931 | 0.703 | 0.487 | 0.194 | 1.673 | 1.504 | 1.151 | 2.678 | 1.862 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2904
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_17170;Hsc_gene_17172
|
— |
Hg_chrom2_TN10mRNA_3043
|
15-Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-21
|
0.996
|
1.000
|
0.000
|
0.000
|
0.153
|
0.083
|
0.007
|
0.362
|
0.221
|
0.257
|
0.201
|
0.003
|
0.177
|
0.817
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003269
|
1.000
|
2.000
|
Hsc_gene_17170.t1;Hsc_gene_17172.t1
|
Hsc_gene_11336.t1;Hsc_gene_17170.t1;Hsc_gene_17172.t1
|
— |
P15704.1 Endoglucanase [Clostridium saccharobutylicum]
|
ABV54447.1 GHF5 endo-1,4-beta-glucanase precursor [Radopholus similis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000272|GO:0004553|GO:0005975
|
GO:0008150_0.944|GO:0003674_0.848|GO:0008152_0.745|GO:0003824_0.740|GO:0044238_0.729|GO:0043170_0.712|GO:0016787_0.699|GO:0009056_0.697|GO:0005975_0.685|GO:0005976_0.684|GO:0009057_0.684|GO:0044042_0.675|GO:0000272_0.674|GO:0016052_0.674|GO:0004553_0.670|GO:0009251_0.670|GO:0016798_0.670|GO:0030243_0.670|GO:0030245_0.670|GO:0051273_0.670|GO:0051275_0.670|GO:0008810_0.650
|
IPR001547+42-273+|IPR017853+9-313+|IPR018087+147-156+
|
— |
PF00150+42-273+Cellulase_(glycosyl_hydrolase_family_5)
|
— |
PTHR34142+16-309+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-316
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.879
|
34354.070
|
8.589
|
9.000
|
13.924
|
14.241
|
43.038
|
56.962
|
8.861
|
5.063
|
57.911
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
125.918
|
4.823
|
13.067
|
15.338
|
30.368
|
18.049
|
37.793
|
225.173
|
545.697
|
12.389
|
240.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.204
|
1.532
|
— |
0.949
|
-0.734
|
1.079
|
3.542
|
-2.430
|
5.188
|
-5.061
|
— | — | — |