Hg_chrom2_TN10mRNA_3046
Organism: Heterodera glycines Gene Locus: chr2:5001674-5002979 Feature type: polypeptideProtein Sequence
Length: 256
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.954 | 1.817 | 0.923 | 0.673 | 0.846 | 1.202 | 0.651 | 1.953 | 1.389 | 1.109 | 1.065 | 1.608 | 1.736 | 0.901 | 0.638 | 0.614 | 0.576 | 1.065 | 2.404 | 0.46 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2907
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_17164
|
Hg_chrom2_TN10mRNA_3046
|
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-20
|
0.998
|
1.000
|
0.000
|
0.000
|
0.331
|
0.256
|
0.035
|
0.463
|
0.101
|
0.241
|
0.223
|
0.005
|
0.124
|
0.658
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006717
|
1.000
|
1.000
|
Hsc_gene_17164.t1
|
Hsc_gene_17164.t1
|
— | — |
XP_054258814.1 lysozyme M1-like [Macrosteles quadrilineatus]
|
WP_127567368
|
0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003796|GO:0009253|GO:0016998
|
— |
IPR002053+39-256_72-235+|IPR017853+75-249+
|
— |
PF01183+72-235+Glycosyl_hydrolases_family_25
|
— |
PTHR34135+49-250+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-256
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
29167.510
|
7.484
|
5.000
|
24.219
|
14.844
|
44.531
|
55.469
|
14.062
|
10.156
|
48.047
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
625.791
|
5.483
|
10.621
|
192.879
|
2062.276
|
2936.147
|
891.732
|
797.120
|
0.000
|
151.738
|
86.707
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.994
|
4.303
|
3.386
|
0.526
|
-1.710
|
-2.012
|
— |
-8.055
|
8.449
|
— | — | — |