Hg_chrom2_TN10mRNA_3053
Organism: Heterodera glycines Gene Locus: chr2:5018495-5019476 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.905 | 0.696 | 1.198 | 1.032 | 0.399 | 1.075 | 0.499 | 1.497 | 1.863 | 0.809 | 0.726 | 1.761 | 1.83 | 0.921 | 1.466 | 1.454 | 0.687 | 1.179 | 0.921 | 0.528 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2914
|
— | — |
1.667
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_3053
|
17-ppJ2_pJ2
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
TRRRPKRMAPPPPEGRR
|
— | — | — | — | — | — |
0.073
|
— | — |
0.163
|
0.158
|
0.012
|
0.189
|
0.244
|
0.157
|
0.138
|
0.014
|
0.203
|
0.824
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006720
|
2.000
|
0.000
|
0.000
|
— | — | — | — |
WP_116984566
|
0.430
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-167
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.850
|
18798.720
|
8.966
|
7.500
|
23.952
|
12.575
|
45.509
|
54.491
|
14.970
|
8.982
|
51.497
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
94.743
|
0.000
|
52.506
|
82.137
|
8.482
|
1.003
|
0.816
|
1.935
|
426.710
|
39.387
|
205.382
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10.057
|
10.789
|
0.749
|
-3.305
|
-3.063
|
— | — | — | — | — | — |
10.443
|
— |
No JSON data available for plots.