SCN Proteipedia

Hg_chrom2_TN10mRNA_3061

Organism: Heterodera glycines Gene Locus: chr2:5042526-5044331 Feature type: polypeptide

Protein Sequence

Length: 409

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.365	1.137	1.111	0.843	0.856	1.379	0.669	1.222	0.978	1.784	0.37	2.445	0.747	0.564	1.148	0.978	0.802	1.074	0.752	0.288	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2922	—	—	1.222	1.000	1.000	1.000	1.000	2.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	KRAR	10-45	0.899	73-93	0.998	—	—	0.002	—	—	0.269	0.147	0.082	0.407	0.227	0.316	0.242	0.022	0.186	0.746

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000784	3.000	3.000	Hsc_gene_1521.t1;Hsc_gene_17103.t1;Hsc_gene_17151.t1	Hsc_gene_17119.t1;Hsc_gene_17155.t1	—	—	KAI3419128.1 hypothetical protein GPALN_006889 [Globodera pallida]	No	0.080

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.947\|GO:0005575_0.895\|GO:0009987_0.892\|GO:0110165_0.888\|GO:0003674_0.862\|GO:0016020_0.816\|GO:0005488_0.785\|GO:0008152_0.763\|GO:0005515_0.762\|GO:0005622_0.760\|GO:0044238_0.741\|GO:0005737_0.737\|GO:0043170_0.725\|GO:0019538_0.723\|GO:0043226_0.714\|GO:0009056_0.702\|GO:0009057_0.688\|GO:0043229_0.684\|GO:0006508_0.680\|GO:0030163_0.678\|GO:0010498_0.674\|GO:0051603_0.674\|GO:0006511_0.670\|GO:0019941_0.670\|GO:0043161_0.670\|GO:0043632_0.670\|GO:0140627_0.670\|GO:0043227_0.668\|GO:0060090_0.656\|GO:0030674_0.654\|GO:0043231_0.653\|GO:0140767_0.650\|GO:1990756_0.650\|GO:0005634_0.571	IPR002110+124-153_124-156_128-155_164-193_164-196_167-193_197-226_197-229_202-295_230-259_230-262_264-294_298-327_298-329_298-330_331-360_331-363+\|IPR036770+45-409_128-384+	SM00248+124-153_164-193_197-226_230-259_264-294_298-327_331-360+	PF00023+128-155_167-193_298-329_331-360+Ankyrin_repeat\|PF12796+202-295+Ankyrin_repeats_(3_copies)	—	PTHR24178+199-382+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	377-409	1.000	1-376	5aqa_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.599	44603.220	5.104	-8.000	21.760	7.090	43.765	56.235	10.513	11.247	52.567

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	black	620.286	26.836	18.140	42.694	144.109	1951.318	138.977	3237.405	0.000	628.948	359.399

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.795	0.532	1.343	1.724	3.773	-3.800	0.619	-4.394	-8.220	6.273	—	—	—

No JSON data available for plots.

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