SCN Proteipedia

Hg_chrom2_TN10mRNA_3063

Organism: Heterodera glycines Gene Locus: chr2:5049901-5058565 Feature type: polypeptide

Protein Sequence

Length: 1,276

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.112	0.893	1.012	0.649	0.993	1.246	0.756	1.489	0.819	1.514	0.843	1.014	1.045	0.814	1.152	0.907	0.848	1.104	1.266	0.807	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2924	—	—	1.111	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	9-33	0.950	—	—	—	—	0.000	—	—	0.352	0.075	0.017	0.570	0.158	0.415	0.166	0.058	0.191	0.026

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006723	1.000	1.000	Hsc_gene_17153.t1	Hsc_gene_17153.t1	—	P53621.2 Coatomer subunit alpha [Homo sapiens]	KAH7728660.1 Copa protein [Aphelenchus avenae]	No	-0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005198\|GO:0005515\|GO:0006886\|GO:0006888\|GO:0016192\|GO:0030117\|GO:0030126	GO:0005575_0.905\|GO:0110165_0.904\|GO:0005622_0.807\|GO:0016020_0.792\|GO:0043226_0.740\|GO:0043229_0.715\|GO:0071944_0.700\|GO:0043227_0.684\|GO:0005886_0.682\|GO:0005737_0.671\|GO:0043231_0.664\|GO:0008150_0.659	IPR001680+4-39_42-81_46-81_49-90_84-123_86-123_91-132_126-165_129-165_133-174_218-257_222-256_225-266_262-301_267-301_269-310_304-342+\|IPR006692+365-793+\|IPR010714+878-1273+\|IPR015943+1-344+\|IPR016391+1-1273+\|IPR019775+152-166+\|IPR020472+110-124_152-166_288-302+\|IPR036322+3-339+\|IPR047312+348-801+\|IPR050844+6-748+	SM00320+4-39_42-81_84-123_126-165_218-257_262-301_304-342+	PF00400+4-39_46-81_86-123_129-165_222-256_267-301+WD_domain,_G-beta_repeat\|PF04053+365-793+Coatomer_WD_associated_region\|PF06957+878-1273+Coatomer_(COPI)_alpha_subunit_C-terminus	G3DSA:1.25.40.470:FF:000002+665-839+Coatomer_subunit_alpha\|G3DSA:2.130.10.10:FF:000559+3-344+Coatomer_subunit_alpha	PTHR19876+6-748+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	890-973	2.000	1-889;974-1276	6pbg_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.625	142125.190	7.258	15.000	25.705	11.129	45.925	54.075	14.185	11.520	50.235

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	brown	2860.590	2111.854	2780.940	4121.859	5345.104	5941.618	4440.753	2504.870	2385.955	507.992	1312.833

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.170	0.828	0.675	0.343	0.168	-0.410	-1.352	0.968	2.120	—	3.588	—	—

No JSON data available for plots.

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