SCN Proteipedia

Hg_chrom2_TN10mRNA_3065

Organism: Heterodera glycines Gene Locus: chr2:5067816-5069684 Feature type: polypeptide

Protein Sequence

Length: 345

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.382	1.011	1.581	0.4	0.87	1.709	0.863	1.739	1.288	1.567	0.264	1.705	0.725	0.446	1.183	0.621	0.998	0.966	0.669	0.256	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2926	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRAR	—	—	—	—	—	—	0.000	—	—	0.421	0.388	0.022	0.668	0.092	0.244	0.112	0.009	0.139	0.438

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000784	3.000	3.000	Hsc_gene_1521.t1;Hsc_gene_17103.t1;Hsc_gene_17151.t1	Hsc_gene_21801.t1	—	—	XP_046280053.1 ankyrin repeat and SOCS box protein 3 isoform X2 [Marmota monax];XP_058429137.1 ankyrin repeat and SOCS box protein 3 isoform X2 [Marmota monax];XP_058429140.1 ankyrin repeat and SOCS box protein 3 isoform X2 [Marmota monax];KAI6055621.1 ASB3 [Marmota monax];KAI6068777.1 ASB3 [Marmota monax]	No	0.140

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.856\|GO:0110165_0.844\|GO:0008150_0.767\|GO:0016020_0.758\|GO:0043226_0.697\|GO:0043227_0.649\|GO:0005622_0.631\|GO:0005737_0.604\|GO:0003674_0.556\|GO:0009987_0.538\|GO:0043229_0.536	IPR002110+61-90_61-93_65-92_101-130_101-133_103-164_134-163_134-166_167-196_167-199_168-198_201-231_206-296_235-264_235-267_268-297_268-300+\|IPR036770+19-345_65-321+	SM00248+61-90_101-130_134-163_167-196_201-231_235-264_268-297+	PF00023+65-92_168-198+Ankyrin_repeat\|PF12796+103-164_206-296+Ankyrin_repeats_(3_copies)	—	PTHR24178+135-319+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-11;314-345	1.000	12-313	3q9u_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.844	37606.360	4.559	-16.000	24.928	7.826	46.377	53.623	11.014	13.913	52.464

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	black	599.164	37.483	29.553	51.008	162.924	1748.759	221.427	2632.544	16.367	777.679	451.402

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.575	—	0.897	1.645	3.437	-2.971	—	-3.425	-5.680	—	—	—	—

No JSON data available for plots.

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