Hg_chrom2_TN10mRNA_3066
Organism: Heterodera glycines Gene Locus: chr2:5070503-5071687 Feature type: polypeptideProtein Sequence
Length: 116
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.501 | 2.205 | 0.784 | 0.892 | 1.293 | 0.442 | 0.513 | 0.0 | 1.149 | 1.398 | 1.306 | 0.507 | 1.676 | 0.663 | 0.88 | 0.616 | 1.272 | 1.698 | 0.0 | 1.014 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2927
|
— | — |
2.111
|
2.000
|
2.000
|
2.000
|
2.000
|
3.000
|
2.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
Gland10|KJ8257211#tn7jg16330t1
|
Hsc_gene_1520
|
— | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.449
|
0.512
|
0.299
|
0.225
|
0.097
|
0.291
|
0.358
|
0.162
|
0.482
|
0.745
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006725
|
1.000
|
1.000
|
Hsc_gene_17150.t1
|
Hsc_gene_1520.t1;Hsc_gene_17150.t1
|
— | — |
AJR19778.1 esophageal gland-localized secretory protein 10 [Heterodera glycines]
|
WP_026625473
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-116
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
13153.180
|
7.668
|
1.000
|
25.000
|
9.483
|
48.276
|
51.724
|
12.931
|
12.069
|
51.724
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1028.677
|
1.235
|
149.128
|
11.200
|
4.210
|
101.007
|
1.414
|
3212.444
|
3869.024
|
293.453
|
1825.841
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.699
|
3.049
|
-3.624
|
-1.456
|
4.616
|
-6.145
|
4.891
|
-11.005
|
3.694
|
-8.324
|
-5.479
|
— | — |
No JSON data available for plots.