Hg_chrom2_TN10mRNA_3071
Organism: Heterodera glycines Gene Locus: chr2:5112874-5120421 Feature type: polypeptideProtein Sequence
Length: 338
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.585 | 1.238 | 0.861 | 0.918 | 1.43 | 1.29 | 0.634 | 1.331 | 1.381 | 1.399 | 2.107 | 1.566 | 1.397 | 0.569 | 0.423 | 1.057 | 0.631 | 0.538 | 0.683 | 0.522 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2932
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKKASMGEQMLKKLKEK
|
— | — | — | — |
1-25
|
0.895
|
1.000
|
0.000
|
0.000
|
0.462
|
0.260
|
0.015
|
0.595
|
0.161
|
0.098
|
0.197
|
0.008
|
0.146
|
0.210
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000532
|
1.000
|
6.000
|
Hsc_gene_17133.t1;Hsc_gene_17140.t1;Hsc_gene_17142.t1;Hsc_gene_21965.t1;Hsc_gene_21967.t1;Hsc_gene_3592.t1
|
— | — |
O55176.3 E3 ubiquitin-protein ligase Praja-1 [Mus musculus]
|
KAJ7974399.1 RING/U-box superfamily protein [Quillaja saponaria]
|
WOL18038
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.943|GO:0005575_0.754|GO:0110165_0.754|GO:0009987_0.736|GO:0003674_0.706|GO:0065007_0.687|GO:0005622_0.649|GO:0050789_0.645|GO:0008152_0.612|GO:0043170_0.603|GO:0050794_0.597|GO:0016020_0.593|GO:0044238_0.585|GO:0043226_0.569|GO:0019538_0.564|GO:0003824_0.556|GO:0140096_0.556|GO:0016740_0.540|GO:0016746_0.534|GO:0016755_0.534|GO:0019787_0.533|GO:0004842_0.531|GO:0050896_0.530|GO:0043229_0.528
|
IPR001841+272-314_273-313_273-314+|IPR013083+257-329+
|
SM00184+273-313+
|
PF13639+272-314+Ring_finger_domain
|
— |
PTHR15710+114-316+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
322-338
|
1.000
|
1-321
|
2l0b_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
38560.600
|
9.007
|
13.500
|
31.953
|
10.355
|
53.550
|
46.450
|
18.639
|
13.314
|
40.828
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
526.659
|
3.016
|
305.443
|
297.902
|
34.285
|
5.108
|
3.847
|
8.251
|
1363.965
|
1034.463
|
1175.678
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.427
|
6.483
|
— |
-3.150
|
-2.729
|
— | — | — | — | — |
-4.495
|
— | — |