SCN Proteipedia

Hg_chrom2_TN10mRNA_3072

Organism: Heterodera glycines Gene Locus: chr2:5127266-5132089 Feature type: polypeptide

Protein Sequence

Length: 290

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.043	2.566	0.627	0.119	0.805	1.503	0.821	1.207	0.92	0.885	0.888	0.811	1.82	1.194	1.056	1.281	1.187	0.313	0.796	0.304	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2933	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.717

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRINLPEAKIQVWFKNRRA	—	—	—	—	—	—	0.000	—	—	0.837	0.134	0.017	0.361	0.017	0.028	0.028	0.014	0.065	0.145

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006726	1.000	1.000	Hsc_gene_17132.t1	—	—	Q90963.1 Paired mesoderm homeobox protein 2 [Gallus gallus]	XP_024499036.1 Retina and anterior neural fold homeobox protein 2 [Strongyloides ratti];CEF59825.1 Retina and anterior neural fold homeobox protein 2 [Strongyloides ratti]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.851\|GO:0009987_0.757\|GO:0032501_0.731\|GO:0032502_0.701\|GO:0048856_0.701\|GO:0065007_0.650\|GO:0050789_0.648\|GO:0050794_0.636\|GO:0003674_0.632\|GO:0003676_0.632\|GO:0005488_0.632\|GO:0097159_0.632\|GO:0007275_0.614\|GO:0003677_0.611\|GO:0043565_0.611\|GO:0003690_0.600\|GO:1990837_0.600\|GO:0005575_0.598\|GO:0048731_0.598\|GO:0110165_0.583\|GO:0043226_0.564\|GO:0008152_0.555\|GO:0019222_0.555\|GO:0031323_0.555\|GO:0044237_0.555\|GO:0005622_0.552\|GO:0043229_0.552\|GO:0009058_0.550\|GO:0009059_0.550\|GO:0043170_0.550\|GO:0044249_0.550\|GO:0010467_0.549\|GO:0009889_0.539\|GO:0031326_0.539\|GO:0044238_0.539\|GO:0080090_0.539\|GO:0006139_0.537\|GO:0016070_0.537\|GO:0090304_0.537\|GO:0019219_0.536\|GO:0051252_0.536\|GO:0060255_0.536\|GO:0010556_0.534\|GO:0010468_0.533\|GO:0032774_0.530\|GO:0034654_0.530\|GO:0141187_0.530\|GO:0006351_0.524\|GO:2001141_0.522\|GO:0006355_0.520	IPR001356+146-206_148-210_149-205+\|IPR009057+127-205+\|IPR017970+181-204+\|IPR050649+128-259+	SM00389+148-210+	PF00046+149-205+Homeodomain	G3DSA:1.10.10.60:FF:000679+150-208+Homeobox_protein_aristaless	PTHR24329+128-259+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-250;288-290	1.000	251-287	9d9v_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.978	31987.420	10.300	11.500	21.724	11.034	54.828	45.172	13.448	8.276	55.172

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	green	326.306	109.567	79.567	94.850	44.350	20.547	53.140	54.710	1023.293	488.846	717.895

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.692	-0.346	0.362	-1.126	-1.097	1.383	1.305	—	—	-3.261	-3.369	—	—

No JSON data available for plots.

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