Hg_chrom2_TN10mRNA_3075
Organism: Heterodera glycines Gene Locus: chr2:5143645-5147042 Feature type: polypeptideProtein Sequence
Length: 377
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.604 | 0.617 | 1.206 | 1.006 | 1.238 | 1.088 | 0.379 | 1.061 | 0.943 | 1.505 | 0.603 | 1.56 | 1.989 | 0.765 | 1.353 | 0.531 | 0.913 | 0.804 | 0.816 | 0.468 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2936
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.552
|
0.108
|
0.005
|
0.578
|
0.103
|
0.220
|
0.164
|
0.011
|
0.100
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006728
|
1.000
|
1.000
|
Hsc_gene_17129.t1
|
Hsc_gene_17129.t1
|
— | — |
KAI1721297.1 proteasome non-ATPase 26S subunit domain-containing protein [Ditylenchus destructor]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0043248
|
GO:0005575_0.879|GO:0110165_0.864|GO:0005622_0.766|GO:0032991_0.620|GO:0008150_0.616|GO:1902494_0.561|GO:0009987_0.560|GO:0140535_0.549|GO:1905368_0.545|GO:1905369_0.545|GO:0000502_0.540|GO:0016020_0.523
|
IPR016024+59-326+|IPR019538+63-374_66-374+
|
— |
PF10508+63-374+Proteasome_non-ATPase_26S_subunit
|
— |
PTHR13554+66-374+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11
|
1.000
|
12-377
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
42495.820
|
4.978
|
-9.000
|
26.790
|
11.936
|
42.971
|
57.029
|
12.732
|
14.058
|
47.745
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
1484.395
|
1203.043
|
1183.982
|
1595.369
|
1864.846
|
2162.296
|
1773.254
|
1656.276
|
540.801
|
1798.975
|
1259.758
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.252
|
0.270
|
0.538
|
0.193
|
0.229
|
-0.276
|
-0.491
|
0.242
|
— | — | — | — | — |
No JSON data available for plots.