Hg_chrom2_TN10mRNA_3076
Organism: Heterodera glycines Gene Locus: chr2:5147503-5149489 Feature type: polypeptideProtein Sequence
Length: 317
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.403 | 1.247 | 0.746 | 0.435 | 1.682 | 1.052 | 1.465 | 0.946 | 1.472 | 0.512 | 0.908 | 1.67 | 1.49 | 0.971 | 1.03 | 0.856 | 0.827 | 1.147 | 0.728 | 0.928 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2937
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.753
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.641
|
0.158
|
0.019
|
0.455
|
0.192
|
0.108
|
0.058
|
0.042
|
0.119
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001824
|
1.000
|
3.000
|
Hsc_gene_17124.t1;Hsc_gene_17126.t1;Hsc_gene_17128.t1
|
Hsc_gene_17124.t1;Hsc_gene_17128.t1
|
— |
Q4G338.1 Peptidyl-prolyl cis-trans isomerase E [Haemonchus contortus]
|
KAI6175915.1 Peptidyl-prolyl cis-trans isomerase E [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003676|GO:0003723|GO:0003755|GO:0006457
|
GO:0005575_0.821|GO:0110165_0.811|GO:0005622_0.680|GO:0008150_0.665|GO:0003674_0.647|GO:0016020_0.593|GO:0005737_0.575|GO:0043226_0.544|GO:0043229_0.531|GO:0043227_0.513|GO:0009987_0.508|GO:0003824_0.507|GO:0043231_0.501
|
IPR000504+13-91_14-87_15-85+|IPR002130+158-314_168-313_175-190_204-216_247-262_262-274_275-290+|IPR012677+4-148+|IPR016304+8-316+|IPR020892+199-216+|IPR029000+149-317_153-315+|IPR034168+15-89+|IPR035979+8-101+
|
SM00360+14-87+
|
PF00076+15-85+RNA_recognition_motif|PF00160+168-313+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
G3DSA:2.40.100.10:FF:000013+149-315+Peptidyl-prolyl_cis-trans_isomerase
|
PTHR11071+155-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
100-155
|
2.000
|
1-99;156-317
|
8ro0_y
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
35240.540
|
5.040
|
-7.000
|
27.129
|
11.356
|
47.634
|
52.366
|
12.934
|
14.196
|
50.158
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
923.389
|
799.734
|
568.216
|
1069.492
|
1187.261
|
752.351
|
1021.621
|
634.881
|
1353.342
|
762.239
|
1015.569
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.724
|
0.282
|
1.022
|
0.118
|
-0.643
|
0.452
|
-0.350
|
0.829
|
— | — | — | — | — |
No JSON data available for plots.