Hg_chrom2_TN10mRNA_3089
Organism: Heterodera glycines Gene Locus: chr2:5259368-5261073 Feature type: polypeptideProtein Sequence
Length: 361
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 1.031 | 1.662 | 0.478 | 1.339 | 1.065 | 0.725 | 0.831 | 1.724 | 1.011 | 0.965 | 2.281 | 0.846 | 0.693 | 1.753 | 0.633 | 0.681 | 1.007 | 0.639 | 0.326 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2950
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.396
|
0.124
|
0.048
|
0.544
|
0.147
|
0.116
|
0.099
|
0.011
|
0.187
|
0.156
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000034
|
1.000
|
26.000
|
Hsc_gene_13209.t1;Hsc_gene_13223.t1;Hsc_gene_13224.t1;Hsc_gene_13224.t2;Hsc_gene_17652.t1;Hsc_gene_17656.t1;Hsc_gene_18405.t1;Hsc_gene_18405.t2;Hsc_gene_19584.t1;Hsc_gene_19588.t1;Hsc_gene_20382.t1;Hsc_gene_20383.t1;Hsc_gene_20384.t1;Hsc_gene_20385.t1;Hsc_gene_20386.t1;Hsc_gene_20387.t1;Hsc_gene_20388.t1;Hsc_gene_23095.t1;Hsc_gene_24626.t1;Hsc_gene_24626.t2;Hsc_gene_25462.t1;Hsc_gene_25463.t1;Hsc_gene_3520.t1;Hsc_gene_3521.t1;Hsc_gene_4096.t1;Hsc_gene_9560.t1
|
Hsc_gene_4096.t1
|
— |
O76371.1 26S protease regulatory subunit 6A [Caenorhabditis elegans]
|
KAI3412009.1 26S proteasome regulatory subunit 6A [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.837|GO:0110165_0.827|GO:0005622_0.800|GO:0008150_0.635|GO:0005737_0.613|GO:0043226_0.568|GO:0043229_0.557|GO:0016020_0.532|GO:0032991_0.521
|
IPR003959+196-279+|IPR003960+250-268+|IPR012340+12-159+|IPR027417+158-346_188-281+|IPR041569+302-345+|IPR050221+23-182+
|
— |
PF00004+196-279+ATPase_family_associated_with_various_cellular_activities_(AAA)|PF17862+302-345+AAA+_lid_domain
|
G3DSA:1.10.8.60:FF:000009+282-355+26S_protease_regulatory_subunit_6A
|
PTHR23073+23-182+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27
|
1.000
|
28-361
|
5vhr_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
40981.730
|
5.393
|
-5.000
|
33.795
|
6.648
|
50.970
|
49.030
|
16.620
|
17.175
|
47.091
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
42.304
|
0.000
|
0.069
|
0.000
|
0.171
|
0.875
|
0.202
|
0.547
|
0.000
|
184.380
|
105.360
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-8.278
|
— |
-9.597
|
— | — |
No JSON data available for plots.