Hg_chrom2_TN10mRNA_3091
Organism: Heterodera glycines Gene Locus: chr2:5274786-5275369 Feature type: polypeptideProtein Sequence
Length: 75
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.62 | 1.55 | 1.212 | 0.92 | 0.667 | 1.026 | 0.317 | 1.333 | 0.593 | 1.622 | 0.808 | 1.569 | 3.704 | 1.026 | 0.272 | 0.762 | 0.874 | 1.212 | 1.026 | 0.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2952
|
— | — |
0.778
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.724
|
0.194
|
0.013
|
0.421
|
0.064
|
0.035
|
0.056
|
0.011
|
0.036
|
0.270
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006732
|
1.000
|
1.000
|
Hsc_gene_2230.t1
|
Hsc_gene_17197.t1;Hsc_gene_17197.t2
|
— | — |
KAH7714092.1 Nuclear hormone receptor [Aphelenchus avenae]
|
HOB12044
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0005575_0.905|GO:0110165_0.903|GO:0016020_0.777|GO:0005622_0.774|GO:0005737_0.763|GO:0043226_0.730|GO:0043229_0.721|GO:0043227_0.720|GO:0043231_0.706|GO:0071944_0.661|GO:0005886_0.650|GO:0005773_0.609|GO:0012505_0.590|GO:0005634_0.573|GO:0031967_0.570|GO:0005635_0.540
|
IPR000536+1-75_2-48+|IPR035500+2-74_3-65+
|
— |
PF00104+2-48+Ligand-binding_domain_of_nuclear_hormone_receptor
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-75
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
8711.040
|
4.833
|
-2.000
|
20.000
|
20.000
|
41.333
|
58.667
|
9.333
|
10.667
|
48.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.457
|
0.926
|
1.151
|
1.141
|
0.178
|
0.746
|
0.909
|
0.280
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.