Hg_chrom2_TN10mRNA_3093
Organism: Heterodera glycines Gene Locus: chr2:5280886-5282112 Feature type: polypeptideProtein Sequence
Length: 272
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.641 | 1.197 | 0.802 | 1.014 | 0.735 | 0.848 | 0.657 | 0.551 | 1.552 | 1.49 | 0.613 | 1.946 | 2.247 | 0.848 | 1.276 | 0.84 | 0.663 | 1.17 | 2.545 | 0.757 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2954
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RPRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.011
|
0.135
|
0.027
|
0.172
|
0.506
|
0.344
|
0.179
|
0.043
|
0.578
|
0.009
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003039
|
2.000
|
1.000
|
Hsc_gene_2647.t1
|
Hsc_gene_2647.t1
|
— |
O01634.1 Innexin-12 [Caenorhabditis elegans]
|
KAF7635396.1 Innexin [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.866|GO:0005575_0.849|GO:0110165_0.849|GO:0009987_0.702|GO:0030054_0.553|GO:0006810_0.542|GO:0051179_0.542|GO:0051234_0.542|GO:0003674_0.538|GO:0016020_0.528|GO:0065007_0.519|GO:0005886_0.517|GO:0071944_0.517|GO:0032501_0.501
|
IPR000990+1-272_20-240_23-244_31-53_117-131_165-174_189-205+
|
— |
PF00876+20-240+Innexin
|
— |
PTHR11893+23-244+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-272
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
31456.860
|
8.289
|
5.500
|
20.221
|
15.074
|
38.603
|
61.397
|
11.397
|
8.824
|
45.588
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
4.979
|
2.767
|
14.066
|
6.931
|
5.295
|
5.499
|
7.098
|
16.427
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.121
|
1.190
|
-0.913
|
— | — | — |
1.476
|
-1.067
|
— | — | — | — | — |
No JSON data available for plots.