Hg_chrom2_TN10mRNA_3095
Organism: Heterodera glycines Gene Locus: chr2:5304828-5305661 Feature type: polypeptideProtein Sequence
Length: 163
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.713 | 0.999 | 0.781 | 0.846 | 1.022 | 1.416 | 0.73 | 1.84 | 1.091 | 1.326 | 0.93 | 2.165 | 1.534 | 1.18 | 0.876 | 0.789 | 0.805 | 0.837 | 0.944 | 1.083 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2956
|
— | — |
2.667
|
3.000
|
2.000
|
2.000
|
2.000
|
4.000
|
2.000
|
3.000
|
5.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.621
|
0.127
|
0.170
|
0.726
|
0.103
|
0.038
|
0.088
|
0.042
|
0.075
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000188
|
10.000
|
1.000
|
Hsc_gene_12385.t1
|
Hsc_gene_19130.t1;Hsc_gene_25623.t1
|
— |
O02658.1 Serine/threonine-protein phosphatase PP1-gamma [Caenorhabditis elegans]
|
KAF7638975.1 Serine/threonine-protein phosphatase [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.822|GO:0005575_0.771|GO:0110165_0.771|GO:0009987_0.755|GO:0003674_0.741|GO:0005622_0.698|GO:0016020_0.617|GO:0005737_0.612|GO:0003824_0.608|GO:0043226_0.559|GO:0016787_0.550|GO:0043229_0.548|GO:0140096_0.544|GO:0016788_0.535|GO:0065007_0.525|GO:0016791_0.521|GO:0042578_0.521|GO:0004721_0.516|GO:0050789_0.514
|
IPR004843+35-147+|IPR006186+7-162_35-62_64-91_97-121_98-103+|IPR029052+3-154_8-153+|IPR050341+8-150+
|
SM00156+7-162+
|
PF00149+35-147+Calcineurin-like_phosphoesterase
|
— |
PTHR11668+8-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
160-163
|
1.000
|
1-159
|
8pq7_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
18593.410
|
7.372
|
3.000
|
24.540
|
14.110
|
44.785
|
55.215
|
14.110
|
10.429
|
45.399
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
198.368
|
7.419
|
10.877
|
52.506
|
106.467
|
656.493
|
69.302
|
1107.186
|
0.000
|
114.014
|
65.151
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.686
|
2.385
|
0.989
|
2.638
|
-3.233
|
0.640
|
-3.850
|
-7.622
|
6.571
|
— | — | — |
No JSON data available for plots.