Hg_chrom2_TN10mRNA_3096
Organism: Heterodera glycines Gene Locus: chr2:5307581-5308561 Feature type: polypeptideProtein Sequence
Length: 187
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.617 | 0.746 | 0.681 | 1.844 | 0.446 | 1.371 | 0.955 | 1.872 | 1.07 | 1.084 | 0.729 | 1.573 | 1.188 | 0.823 | 0.109 | 2.139 | 0.438 | 0.891 | 0.411 | 0.157 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2957
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
Gland5|MT0123171#X12jg4659t1
|
Hsc_gene_1943;Hsc_gene_11283;Hsc_gene_11284;Hsc_gene_11688;Hsc_gene_11689;Hsc_gene_1514;Hsc_gene_1515;Hsc_gene_17202;Hsc_gene_19142;Hsc_gene_16881;Hsc_gene_16882;Hsc_gene_16883;Hsc_gene_17216;Hsc_gene_19127;Hsc_gene_19128;Hsc_gene_17203;Hsc_gene_19143;Hsc_gene_24308
|
— | — |
24-J3_Female
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
— | — | — |
14-35
|
0.995
|
1-26
|
0.986
|
0.999
|
0.000
|
0.000
|
0.671
|
0.294
|
0.020
|
0.420
|
0.073
|
0.090
|
0.074
|
0.022
|
0.301
|
0.329
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000083
|
13.000
|
3.000
|
Hsc_gene_1514.t1;Hsc_gene_1515.t1;Hsc_gene_1943.t1
|
Hsc_gene_11687.t1;Hsc_gene_11688.t1;Hsc_gene_14768.t1;Hsc_gene_1515.t1;Hsc_gene_17189.t1;Hsc_gene_17190.t1;Hsc_gene_17203.t1;Hsc_gene_17215.t1;Hsc_gene_17216.t1;Hsc_gene_17219.t1;Hsc_gene_17220.t1;Hsc_gene_19127.t1;Hsc_gene_19128.t1;Hsc_gene_19141.t1;Hsc_gene_19143.t1;Hsc_gene_19761.t1;Hsc_gene_19764.t1;Hsc_gene_24308.t1;Hsc_gene_24309.t1;Hsc_gene_4163.t1;Hsc_gene_4163.t2
|
— | — |
AJR19773.1 esophageal gland-localized secretory protein 5 [Heterodera glycines]
|
No
|
0.570
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
154-187
|
1.000
|
1-153
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
19149.800
|
6.798
|
1.500
|
15.508
|
9.091
|
41.711
|
58.289
|
9.091
|
6.417
|
62.032
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
pink
|
448.104
|
0.531
|
0.747
|
6.349
|
214.699
|
39.569
|
105.674
|
2.748
|
0.000
|
1821.586
|
1040.907
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.433
|
3.218
|
5.045
|
-2.426
|
1.427
|
-3.958
|
5.404
|
-11.627
|
— | — | — | — |